RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 USP47Q96K76 1375 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 CARD14Q9BXL6 1004 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 CDHR5Q9HBB8 845 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 ANKRD26Q9UPS8 1709 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 AMPHP49418 695 aa8.15□□□□□ -1.1
USP3-215ENST00000559771 HSP90AB2PQ58FF8 381 aa8.15□□□□□ -1.1
USP3-215ENST00000559771 SLC27A3Q5K4L6 730 aa8.15□□□□□ -1.1
USP3-215ENST00000559771 USHBP1Q8N6Y0 703 aa8.15□□□□□ -1.1
USP3-215ENST00000559771 ZCRB1Q8TBF4 217 aaKnown RBP8.15□□□□□ -1.1
USP3-215ENST00000559771 ARXQ96QS3 562 aa8.15□□□□□ -1.1
USP3-215ENST00000559771 RYDENQ9NUL5 291 aaKnown RBP8.15□□□□□ -1.1
USP3-215ENST00000559771 CHD4Q14839 1912 aa8.15□□□□□ -1.11
USP3-215ENST00000559771 TAF1LQ8IZX4 1826 aa8.15□□□□□ -1.11
USP3-215ENST00000559771 PKD1L3Q7Z443 1732 aa8.15□□□□□ -1.11
USP3-215ENST00000559771 C5P01031 1676 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 NCAPD2Q15021 1401 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 TTC24A2A3L6 582 aaPredicted RBP8.14□□□□□ -1.11
USP3-215ENST00000559771 RASSF7Q02833 373 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 KRTAP1-3Q8IUG1 177 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 TMEM151AQ8N4L1 468 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 ITGB4P16144 1822 aa8.14□□□□□ -1.11
USP3-215ENST00000559771 INSRP06213 1382 aa8.13□□□□□ -1.11
USP3-215ENST00000559771 J3QL48 77 aa8.13□□□□□ -1.11
USP3-215ENST00000559771 ZNF784Q8NCA9 323 aaPredicted RBP8.13□□□□□ -1.11
USP3-215ENST00000559771 HPS1Q92902 700 aa8.13□□□□□ -1.11
USP3-215ENST00000559771 SYTL4Q96C24 671 aaPredicted RBP8.13□□□□□ -1.11
USP3-215ENST00000559771 MAP2P11137 1827 aaKnown RBP8.13□□□□□ -1.11
USP3-215ENST00000559771 CYP27B1O15528 508 aa8.12□□□□□ -1.11
USP3-215ENST00000559771 GTPBP6O43824 516 aaPredicted RBP8.12□□□□□ -1.11
USP3-215ENST00000559771 SLC24A1O60721 1099 aa8.12□□□□□ -1.11
USP3-215ENST00000559771 GDF11O95390 407 aa8.12□□□□□ -1.11
USP3-215ENST00000559771 CD2BP2O95400 341 aaKnown RBP8.12□□□□□ -1.11
USP3-215ENST00000559771 TMF1P82094 1093 aa8.12□□□□□ -1.11
USP3-215ENST00000559771 COL23A1Q86Y22 540 aaPredicted RBP8.12□□□□□ -1.11
USP3-215ENST00000559771 NLGN2Q8NFZ4 835 aa8.12□□□□□ -1.11
USP3-215ENST00000559771 FLT4P35916 1363 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 KIF24Q5T7B8 1368 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 CGNL1Q0VF96 1302 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 AMIGO3Q86WK7 504 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 TFCP2L1Q9NZI6 479 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 CCNL1Q9UK58 526 aaPredicted RBP8.11□□□□□ -1.11
USP3-215ENST00000559771 EMILIN1Q9Y6C2 1016 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 NSD3Q9BZ95 1437 aa8.11□□□□□ -1.11
USP3-215ENST00000559771 C4BP0C0L5 1744 aa8.1□□□□□ -1.11
USP3-215ENST00000559771 TRIM26Q12899 539 aaPredicted RBP8.1□□□□□ -1.11
USP3-215ENST00000559771 PDIA6Q15084 440 aa8.1□□□□□ -1.11
USP3-215ENST00000559771 SNIP1Q8TAD8 396 aaKnown RBP8.1□□□□□ -1.11
USP3-215ENST00000559771 NPDC1Q9NQX5 325 aaPredicted RBP8.1□□□□□ -1.11
USP3-215ENST00000559771 UBR3Q6ZT12 1888 aa8.1□□□□□ -1.11
USP3-215ENST00000559771 SMG6Q86US8 1419 aaKnown RBP8.1□□□□□ -1.11
USP3-215ENST00000559771 TATP17735 454 aaPredicted RBP8.09□□□□□ -1.11
USP3-215ENST00000559771 RAPGEF4Q8WZA2 1011 aa8.09□□□□□ -1.11
USP3-215ENST00000559771 PSMG3-AS1Q96PY0 264 aa8.09□□□□□ -1.11
USP3-215ENST00000559771 PALLDQ8WX93 1383 aa8.09□□□□□ -1.12
USP3-215ENST00000559771 PCDH11XQ9BZA7 1347 aa8.08□□□□□ -1.12
USP3-215ENST00000559771 PCDH11YQ9BZA8 1340 aa8.08□□□□□ -1.12
USP3-215ENST00000559771 YBX3P16989 372 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP3-215ENST00000559771 PADI6Q6TGC4 694 aa8.08□□□□□ -1.12
USP3-215ENST00000559771 SMIM5Q71RC9 77 aa8.08□□□□□ -1.12
USP3-215ENST00000559771 SCUBE3Q8IX30 993 aa8.08□□□□□ -1.12
USP3-215ENST00000559771 WASHC2AQ641Q2 1341 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 POLD1P28340 1107 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 GPR162Q16538 588 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 MSL1Q68DK7 614 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 MPRIPQ6WCQ1 1025 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 PIGBQ92521 554 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 POLKQ9UBT6 870 aa8.07□□□□□ -1.12
USP3-215ENST00000559771 FCF1Q9Y324 198 aaKnown RBP8.06□□□□□ -1.12
USP3-215ENST00000559771 KIAA1551Q9HCM1 1747 aa8.06□□□□□ -1.12
USP3-215ENST00000559771 WNT7AO00755 349 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 NR1I2O75469 434 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 ITPK1Q13572 414 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 LINC00116Q8NCU8 138 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 TIMELESSQ9UNS1 1208 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 ZNF831Q5JPB2 1677 aa8.05□□□□□ -1.12
USP3-215ENST00000559771 COL5A3P25940 1745 aaPredicted RBP8.04□□□□□ -1.12
USP3-215ENST00000559771 PPM1GO15355 546 aaPredicted RBP8.04□□□□□ -1.12
USP3-215ENST00000559771 PHKG2P15735 406 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 OSBPP22059 807 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 C1QTNF8P60827 252 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 EIF4A2Q14240 407 aaKnown RBP8.04□□□□□ -1.12
USP3-215ENST00000559771 SLC4A9Q96Q91 983 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 SPSB2Q99619 263 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 ASAP1Q9ULH1 1129 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 KDRP35968 1356 aa8.04□□□□□ -1.12
USP3-215ENST00000559771 LOC102724428A0A0B4J2F2 783 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 CFHP08603 1231 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 SLC4A3P48751 1232 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 SIK1P57059 783 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 TRIM46Q7Z4K8 759 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 SMARCC1Q92922 1105 aaPredicted RBP8.03□□□□□ -1.12
USP3-215ENST00000559771 MRGPRX2Q96LB1 330 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 ATG3Q9NT62 314 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 SPG7Q9UQ90 795 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 CD2APQ9Y5K6 639 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 KIF13BQ9NQT8 1826 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 IGSF1Q8N6C5 1336 aa8.03□□□□□ -1.12
USP3-215ENST00000559771 CLSPNQ9HAW4 1339 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms