RNA–Protein interactions for RNA: ENST00000559092.1

SMAD3-210, Transcript of SMAD family member 3, humanhuman

TSL 4 BASIC

Gene SMAD3, Length 584 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-210ENST00000559092 NLRP10Q86W26 655 aa22.78■■□□□ 1.24
SMAD3-210ENST00000559092 RTKN2Q8IZC4 609 aa22.78■■□□□ 1.24
SMAD3-210ENST00000559092 NLRP3Q96P20 1036 aa22.78■■□□□ 1.24
SMAD3-210ENST00000559092 IL16Q14005 1332 aa22.78■■□□□ 1.24
SMAD3-210ENST00000559092 C8orf58Q8NAV2 365 aa22.77■■□□□ 1.24
SMAD3-210ENST00000559092 RPGRQ92834 1020 aaKnown RBP22.77■■□□□ 1.24
SMAD3-210ENST00000559092 NMRK2Q9NPI5 230 aa22.77■■□□□ 1.24
SMAD3-210ENST00000559092 COL11A2P13942 1736 aaPredicted RBP22.77■■□□□ 1.23
SMAD3-210ENST00000559092 GLTPD2A6NH11 291 aa22.76■■□□□ 1.23
SMAD3-210ENST00000559092 ELL2O00472 640 aaPredicted RBP22.76■■□□□ 1.23
SMAD3-210ENST00000559092 TOMM70O94826 608 aa22.76■■□□□ 1.23
SMAD3-210ENST00000559092 CC2D2BQ6DHV5 1058 aa22.76■■□□□ 1.23
SMAD3-210ENST00000559092 RBM17Q96I25 401 aaKnown RBP22.76■■□□□ 1.23
SMAD3-210ENST00000559092 CRAMP1Q96RY5 1269 aa22.76■■□□□ 1.23
SMAD3-210ENST00000559092 GRIPAP1Q4V328 841 aa22.75■■□□□ 1.23
SMAD3-210ENST00000559092 NUP98P52948 1817 aa22.74■■□□□ 1.23
SMAD3-210ENST00000559092 SENP3-EIF4A1A0A087X0R7 540 aa22.74■■□□□ 1.23
SMAD3-210ENST00000559092 TRIM28Q13263 835 aaKnown RBP22.74■■□□□ 1.23
SMAD3-210ENST00000559092 CCDC30Q5VVM6 783 aa22.74■■□□□ 1.23
SMAD3-210ENST00000559092 DPY19L2Q6NUT2 758 aa22.74■■□□□ 1.23
SMAD3-210ENST00000559092 TRMT112Q9UI30 125 aaKnown RBP22.74■■□□□ 1.23
SMAD3-210ENST00000559092 FKBP4Q02790 459 aaKnown RBP eCLIP22.73■■□□□ 1.23
SMAD3-210ENST00000559092 WDR63Q8IWG1 891 aa22.73■■□□□ 1.23
SMAD3-210ENST00000559092 ISCA1Q9BUE6 129 aa22.73■■□□□ 1.23
SMAD3-210ENST00000559092 SH3TC1Q8TE82 1336 aa22.73■■□□□ 1.23
SMAD3-210ENST00000559092 GOLGA2Q08379 1002 aa22.72■■□□□ 1.23
SMAD3-210ENST00000559092 SLX4Q8IY92 1834 aa22.71■■□□□ 1.23
SMAD3-210ENST00000559092 C3orf67Q6ZVT6 689 aa22.71■■□□□ 1.23
SMAD3-210ENST00000559092 C16orf71Q8IYS4 520 aaPredicted RBP22.71■■□□□ 1.23
SMAD3-210ENST00000559092 TSR2Q969E8 191 aaKnown RBP22.71■■□□□ 1.23
SMAD3-210ENST00000559092 RRAGCQ9HB90 399 aa22.71■■□□□ 1.23
SMAD3-210ENST00000559092 RIC3Q7Z5B4 369 aa22.7■■□□□ 1.22
SMAD3-210ENST00000559092 TSPYL6Q8N831 410 aa22.7■■□□□ 1.22
SMAD3-210ENST00000559092 RBM46Q8TBY0 533 aaKnown RBP22.7■■□□□ 1.22
SMAD3-210ENST00000559092 PSMD1Q99460 953 aa22.7■■□□□ 1.22
SMAD3-210ENST00000559092 SBF1O95248 1867 aa22.69■■□□□ 1.22
SMAD3-210ENST00000559092 VEGFAP15692 232 aaPredicted RBP22.69■■□□□ 1.22
SMAD3-210ENST00000559092 PHAXQ9H814 394 aaKnown RBP22.69■■□□□ 1.22
SMAD3-210ENST00000559092 DDX58O95786 925 aaKnown RBP22.68■■□□□ 1.22
SMAD3-210ENST00000559092 HCLS1P14317 486 aaPredicted RBP22.68■■□□□ 1.22
SMAD3-210ENST00000559092 HSPA6P17066 643 aa22.68■■□□□ 1.22
SMAD3-210ENST00000559092 OLFM4Q6UX06 510 aa22.68■■□□□ 1.22
SMAD3-210ENST00000559092 FAM9BQ8IZU0 186 aa22.68■■□□□ 1.22
SMAD3-210ENST00000559092 TMX4Q9H1E5 349 aaPredicted RBP22.68■■□□□ 1.22
SMAD3-210ENST00000559092 ATP5J2-PTCD1G3V325 749 aa22.67■■□□□ 1.22
SMAD3-210ENST00000559092 PPEF1O14829 653 aaPredicted RBP22.67■■□□□ 1.22
SMAD3-210ENST00000559092 BBOX1O75936 387 aa22.67■■□□□ 1.22
SMAD3-210ENST00000559092 TWISTNBQ3B726 338 aaPredicted RBP22.67■■□□□ 1.22
SMAD3-210ENST00000559092 SYNE4Q8N205 404 aa22.67■■□□□ 1.22
SMAD3-210ENST00000559092 STK31Q9BXU1 1019 aa22.66■■□□□ 1.22
SMAD3-210ENST00000559092 ZNF277Q9NRM2 450 aaPredicted RBP22.66■■□□□ 1.22
SMAD3-210ENST00000559092 FER1L6Q2WGJ9 1857 aa22.66■■□□□ 1.22
SMAD3-210ENST00000559092 ARFGEF2Q9Y6D5 1785 aa22.66■■□□□ 1.22
SMAD3-210ENST00000559092 TNRC6CQ9HCJ0 1690 aaKnown RBP22.65■■□□□ 1.22
SMAD3-210ENST00000559092 FSTL1Q12841 308 aa22.65■■□□□ 1.22
SMAD3-210ENST00000559092 DDX46Q7L014 1031 aaKnown RBP22.65■■□□□ 1.22
SMAD3-210ENST00000559092 ATP6V0A2Q9Y487 856 aa22.65■■□□□ 1.22
SMAD3-210ENST00000559092 SNED1Q8TER0 1413 aa22.65■■□□□ 1.22
SMAD3-210ENST00000559092 HSP90B1P14625 803 aaKnown RBP22.64■■□□□ 1.21
SMAD3-210ENST00000559092 IARSP41252 1262 aaKnown RBP22.64■■□□□ 1.21
SMAD3-210ENST00000559092 CCDC191Q8NCU4 936 aa22.64■■□□□ 1.21
SMAD3-210ENST00000559092 FAM89AQ96GI7 184 aa22.64■■□□□ 1.21
SMAD3-210ENST00000559092 SALL2Q9Y467 1007 aaPredicted RBP22.64■■□□□ 1.21
SMAD3-210ENST00000559092 SF3B3Q15393 1217 aaKnown RBP22.63■■□□□ 1.21
SMAD3-210ENST00000559092 ZBTB38Q8NAP3 1195 aaPredicted RBP22.63■■□□□ 1.21
SMAD3-210ENST00000559092 ABCC4O15439 1325 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 FANCIQ9NVI1 1328 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 POTECB2RU33 542 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 TMC4Q7Z404 712 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 SP8Q8IXZ3 490 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 METTL22Q9BUU2 404 aaPredicted RBP22.62■■□□□ 1.21
SMAD3-210ENST00000559092 VPS33BQ9H267 617 aa22.62■■□□□ 1.21
SMAD3-210ENST00000559092 CEP350Q5VT06 3117 aa22.61■■□□□ 1.21
SMAD3-210ENST00000559092 SLC4A2P04920 1241 aa22.61■■□□□ 1.21
SMAD3-210ENST00000559092 GRAPQ13588 217 aa22.61■■□□□ 1.21
SMAD3-210ENST00000559092 KSR2Q6VAB6 950 aa22.61■■□□□ 1.21
SMAD3-210ENST00000559092 GRAPLQ8TC17 118 aaPredicted RBP22.61■■□□□ 1.21
SMAD3-210ENST00000559092 JDP2Q8WYK2 163 aa22.61■■□□□ 1.21
SMAD3-210ENST00000559092 FZD9O00144 591 aa22.6■■□□□ 1.21
SMAD3-210ENST00000559092 IRS4O14654 1257 aaPredicted RBP22.6■■□□□ 1.21
SMAD3-210ENST00000559092 DDNO94850 711 aaPredicted RBP22.6■■□□□ 1.21
SMAD3-210ENST00000559092 SMC1BQ8NDV3 1235 aa22.6■■□□□ 1.21
SMAD3-210ENST00000559092 MYD88Q99836 296 aa22.6■■□□□ 1.21
SMAD3-210ENST00000559092 MYH16Q9H6N6 1097 aa22.6■■□□□ 1.21
SMAD3-210ENST00000559092 TCERG1O14776 1098 aaKnown RBP22.59■■□□□ 1.21
SMAD3-210ENST00000559092 VAMP4O75379 141 aa22.59■■□□□ 1.21
SMAD3-210ENST00000559092 APLP1P51693 650 aa22.59■■□□□ 1.21
SMAD3-210ENST00000559092 L3MBTL3Q96JM7 780 aaPredicted RBP22.59■■□□□ 1.21
SMAD3-210ENST00000559092 CWC25Q9NXE8 425 aaPredicted RBP22.59■■□□□ 1.21
SMAD3-210ENST00000559092 MAP3K2Q9Y2U5 619 aa22.59■■□□□ 1.21
SMAD3-210ENST00000559092 PI4KAP2A4QPH2 592 aa22.58■■□□□ 1.21
SMAD3-210ENST00000559092 PCCAP05165 728 aaPredicted RBP22.58■■□□□ 1.21
SMAD3-210ENST00000559092 PI4KAP1Q8N8J0 262 aa22.58■■□□□ 1.21
SMAD3-210ENST00000559092 SUPT20HQ8NEM7 779 aa22.58■■□□□ 1.21
SMAD3-210ENST00000559092 ANKRD36CQ5JPF3 1778 aa22.58■■□□□ 1.2
SMAD3-210ENST00000559092 IQCA1LA6NCM1 817 aa22.57■■□□□ 1.2
SMAD3-210ENST00000559092 ZNF428Q96B54 188 aa22.57■■□□□ 1.2
SMAD3-210ENST00000559092 RTFDC1Q9BY42 306 aaPredicted RBP22.57■■□□□ 1.2
SMAD3-210ENST00000559092 EXOSC9Q06265 439 aaKnown RBP22.56■■□□□ 1.2
SMAD3-210ENST00000559092 NEXNQ0ZGT2 675 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms