RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 TAOK3Q9H2K8 898 aa16.23■□□□□ 0.19
SMAD3-208ENST00000558827 PHAXQ9H814 394 aaKnown RBP16.23■□□□□ 0.19
SMAD3-208ENST00000558827 CALD1Q05682 793 aaKnown RBP16.22■□□□□ 0.19
SMAD3-208ENST00000558827 TCIRG1Q13488 830 aa16.22■□□□□ 0.19
SMAD3-208ENST00000558827 PARP10Q53GL7 1025 aa16.22■□□□□ 0.19
SMAD3-208ENST00000558827 ANKRD13DQ6ZTN6 518 aa16.22■□□□□ 0.19
SMAD3-208ENST00000558827 NLRP10Q86W26 655 aa16.22■□□□□ 0.19
SMAD3-208ENST00000558827 ZNF277Q9NRM2 450 aaPredicted RBP16.22■□□□□ 0.19
SMAD3-208ENST00000558827 DBF4Q9UBU7 674 aaPredicted RBP16.22■□□□□ 0.19
SMAD3-208ENST00000558827 KDM2BQ8NHM5 1336 aa16.21■□□□□ 0.19
SMAD3-208ENST00000558827 CCDC93Q567U6 631 aa16.21■□□□□ 0.19
SMAD3-208ENST00000558827 WWC1Q8IX03 1113 aa16.21■□□□□ 0.19
SMAD3-208ENST00000558827 C16orf71Q8IYS4 520 aaPredicted RBP16.21■□□□□ 0.19
SMAD3-208ENST00000558827 TRMT112Q9UI30 125 aaKnown RBP16.21■□□□□ 0.19
SMAD3-208ENST00000558827 FER1L6Q2WGJ9 1857 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 HOXB7P09629 217 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 ALDH1B1P30837 517 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 HSP90AB3PQ58FF7 597 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 PLBD2Q8NHP8 589 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 JARID2Q92833 1246 aaPredicted RBP16.2■□□□□ 0.18
SMAD3-208ENST00000558827 NLRP3Q96P20 1036 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 HYPKQ9NX55 129 aa16.2■□□□□ 0.18
SMAD3-208ENST00000558827 CRY2Q49AN0 593 aa16.19■□□□□ 0.18
SMAD3-208ENST00000558827 RIC3Q7Z5B4 369 aa16.19■□□□□ 0.18
SMAD3-208ENST00000558827 RBM17Q96I25 401 aaKnown RBP16.19■□□□□ 0.18
SMAD3-208ENST00000558827 GLTPD2A6NH11 291 aa16.18■□□□□ 0.18
SMAD3-208ENST00000558827 SOGA3Q5TF21 947 aa16.18■□□□□ 0.18
SMAD3-208ENST00000558827 FAM89AQ96GI7 184 aa16.18■□□□□ 0.18
SMAD3-208ENST00000558827 TOMM70O94826 608 aa16.17■□□□□ 0.18
SMAD3-208ENST00000558827 DDNO94850 711 aaPredicted RBP16.17■□□□□ 0.18
SMAD3-208ENST00000558827 FKBP4Q02790 459 aaKnown RBP eCLIP16.17■□□□□ 0.18
SMAD3-208ENST00000558827 SLC10A5Q5PT55 438 aa16.17■□□□□ 0.18
SMAD3-208ENST00000558827 MYD88Q99836 296 aa16.17■□□□□ 0.18
SMAD3-208ENST00000558827 ARFGEF2Q9Y6D5 1785 aa16.17■□□□□ 0.18
SMAD3-208ENST00000558827 TIAM2Q8IVF5 1701 aa16.16■□□□□ 0.18
SMAD3-208ENST00000558827 IBTKQ9P2D0 1353 aaPredicted RBP16.16■□□□□ 0.18
SMAD3-208ENST00000558827 HOXA10P31260 410 aaPredicted RBP16.16■□□□□ 0.18
SMAD3-208ENST00000558827 GOLGA2Q08379 1002 aa16.16■□□□□ 0.18
SMAD3-208ENST00000558827 ISCA1Q9BUE6 129 aa16.16■□□□□ 0.18
SMAD3-208ENST00000558827 SH3TC1Q8TE82 1336 aa16.16■□□□□ 0.18
SMAD3-208ENST00000558827 LTBP3Q9NS15 1303 aa16.16■□□□□ 0.18
SMAD3-208ENST00000558827 ANKRD36CQ5JPF3 1778 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 PPEF1O14829 653 aaPredicted RBP16.15■□□□□ 0.18
SMAD3-208ENST00000558827 HSPA6P17066 643 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 TAF1P21675 1872 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 CCDC27Q2M243 656 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 CCDC30Q5VVM6 783 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 DPY19L2Q6NUT2 758 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 G2E3Q7L622 706 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 RTKN2Q8IZC4 609 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 CRAMP1Q96RY5 1269 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 ABCC4O15439 1325 aa16.15■□□□□ 0.18
SMAD3-208ENST00000558827 DICER1Q9UPY3 1922 aaKnown RBP16.14■□□□□ 0.17
SMAD3-208ENST00000558827 POTECB2RU33 542 aa16.14■□□□□ 0.17
SMAD3-208ENST00000558827 HTRA3P83110 453 aa16.14■□□□□ 0.17
SMAD3-208ENST00000558827 TWISTNBQ3B726 338 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-208ENST00000558827 SPINK5Q9NQ38 1064 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-208ENST00000558827 VEGFAP15692 232 aaPredicted RBP16.13■□□□□ 0.17
SMAD3-208ENST00000558827 IARSP41252 1262 aaKnown RBP16.13■□□□□ 0.17
SMAD3-208ENST00000558827 ZNF541Q9H0D2 1346 aa16.13■□□□□ 0.17
SMAD3-208ENST00000558827 ZC3H4Q9UPT8 1303 aaKnown RBP16.13■□□□□ 0.17
SMAD3-208ENST00000558827 EXOSC9Q06265 439 aaKnown RBP16.12■□□□□ 0.17
SMAD3-208ENST00000558827 DDX46Q7L014 1031 aaKnown RBP16.12■□□□□ 0.17
SMAD3-208ENST00000558827 RBM46Q8TBY0 533 aaKnown RBP16.12■□□□□ 0.17
SMAD3-208ENST00000558827 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
SMAD3-208ENST00000558827 MAP3K2Q9Y2U5 619 aa16.12■□□□□ 0.17
SMAD3-208ENST00000558827 LAMB2P55268 1798 aa16.12■□□□□ 0.17
SMAD3-208ENST00000558827 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
SMAD3-208ENST00000558827 IRS4O14654 1257 aaPredicted RBP16.11■□□□□ 0.17
SMAD3-208ENST00000558827 SLC4A2P04920 1241 aa16.11■□□□□ 0.17
SMAD3-208ENST00000558827 STK31Q9BXU1 1019 aa16.11■□□□□ 0.17
SMAD3-208ENST00000558827 RIC1Q4ADV7 1423 aa16.11■□□□□ 0.17
SMAD3-208ENST00000558827 PI4KAP2A4QPH2 592 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 POTEJP0CG39 1038 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 LARGE2Q8N3Y3 721 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 PI4KAP1Q8N8J0 262 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 ATP6V0A2Q9Y487 856 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 GJA3Q9Y6H8 435 aa16.1■□□□□ 0.17
SMAD3-208ENST00000558827 CEP350Q5VT06 3117 aa16.09■□□□□ 0.17
SMAD3-208ENST00000558827 DDX58O95786 925 aaKnown RBP16.09■□□□□ 0.17
SMAD3-208ENST00000558827 CC2D2BQ6DHV5 1058 aa16.09■□□□□ 0.17
SMAD3-208ENST00000558827 WDR63Q8IWG1 891 aa16.09■□□□□ 0.17
SMAD3-208ENST00000558827 CELF1Q92879 486 aaKnown RBP16.09■□□□□ 0.17
SMAD3-208ENST00000558827 METTL22Q9BUU2 404 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-208ENST00000558827 TMX4Q9H1E5 349 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-208ENST00000558827 IL16Q14005 1332 aa16.09■□□□□ 0.17
SMAD3-208ENST00000558827 PPIP5K2O43314 1243 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 GRAPQ13588 217 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 AOC3Q16853 763 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 KSR2Q6VAB6 950 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 GRAPLQ8TC17 118 aaPredicted RBP16.08■□□□□ 0.16
SMAD3-208ENST00000558827 JDP2Q8WYK2 163 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 PSMD1Q99460 953 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 RNF123Q5XPI4 1314 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 SNED1Q8TER0 1413 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 COL4A5P29400 1685 aa16.08■□□□□ 0.16
SMAD3-208ENST00000558827 VAMP4O75379 141 aa16.07■□□□□ 0.16
SMAD3-208ENST00000558827 BBOX1O75936 387 aa16.07■□□□□ 0.16
SMAD3-208ENST00000558827 TRIM28Q13263 835 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms