RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 CWC25Q9NXE8 425 aaPredicted RBP17.4■□□□□ 0.38
SHMT2-234ENST00000557703 TRMT112Q9UI30 125 aaKnown RBP17.4■□□□□ 0.38
SHMT2-234ENST00000557703 SH3TC1Q8TE82 1336 aa17.4■□□□□ 0.38
SHMT2-234ENST00000557703 ANKRD36CQ5JPF3 1778 aa17.4■□□□□ 0.38
SHMT2-234ENST00000557703 ZBTB38Q8NAP3 1195 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-234ENST00000557703 MYD88Q99836 296 aa17.39■□□□□ 0.37
SHMT2-234ENST00000557703 ARFGEF2Q9Y6D5 1785 aa17.38■□□□□ 0.37
SHMT2-234ENST00000557703 ALDH1L1O75891 902 aa17.38■□□□□ 0.37
SHMT2-234ENST00000557703 PCCAP05165 728 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-234ENST00000557703 KLHL34Q8N239 644 aa17.38■□□□□ 0.37
SHMT2-234ENST00000557703 API5Q9BZZ5 524 aaKnown RBP17.38■□□□□ 0.37
SHMT2-234ENST00000557703 PIM2Q9P1W9 311 aa17.38■□□□□ 0.37
SHMT2-234ENST00000557703 CRY2Q49AN0 593 aa17.37■□□□□ 0.37
SHMT2-234ENST00000557703 NLRP3Q96P20 1036 aa17.37■□□□□ 0.37
SHMT2-234ENST00000557703 NEURL1BA8MQ27 555 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 ATP5J2-PTCD1G3V325 749 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 NPR1P16066 1061 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 STYK1Q6J9G0 422 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 CNKSR1Q969H4 720 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 MASTLQ96GX5 879 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 PXDNLA1KZ92 1463 aa17.36■□□□□ 0.37
SHMT2-234ENST00000557703 GRIN3BO60391 1043 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 IGKV5-2P06315 115 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 SRGNP10124 158 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 ALDH1B1P30837 517 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 BEND3Q5T5X7 828 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 SRCIN1Q9C0H9 1055 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 CDHR2Q9BYE9 1310 aa17.35■□□□□ 0.37
SHMT2-234ENST00000557703 DPEP1P16444 411 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 KCNA3P22001 575 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 GCKRQ14397 625 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 ERFEQ4G0M1 354 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 C2CD5Q86YS7 1000 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 NLGN2Q8NFZ4 835 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 HDAC5Q9UQL6 1122 aa17.34■□□□□ 0.37
SHMT2-234ENST00000557703 A0A0G2JLW4 131 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 FAM177BA6PVY3 158 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 MS4A1P11836 297 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 HOXA10P31260 410 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-234ENST00000557703 CCT4P50991 539 aaKnown RBP17.33■□□□□ 0.36
SHMT2-234ENST00000557703 GRIPAP1Q4V328 841 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 DALRD3Q5D0E6 543 aaKnown RBP17.33■□□□□ 0.36
SHMT2-234ENST00000557703 NUTM1Q86Y26 1132 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 TTLL6Q8N841 843 aa17.33■□□□□ 0.36
SHMT2-234ENST00000557703 NOB1Q9ULX3 412 aaKnown RBP17.33■□□□□ 0.36
SHMT2-234ENST00000557703 H7C1W4 665 aa17.32■□□□□ 0.36
SHMT2-234ENST00000557703 SF3B3Q15393 1217 aaKnown RBP17.32■□□□□ 0.36
SHMT2-234ENST00000557703 SOGA3Q5TF21 947 aa17.32■□□□□ 0.36
SHMT2-234ENST00000557703 CRAMP1Q96RY5 1269 aa17.32■□□□□ 0.36
SHMT2-234ENST00000557703 BCL2L13Q9BXK5 485 aa17.32■□□□□ 0.36
SHMT2-234ENST00000557703 F6X3S4 739 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 IRS4O14654 1257 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-234ENST00000557703 PDE8AO60658 829 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 GPR162Q16538 588 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 ZKSCAN2Q63HK3 967 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 ATF7IPQ6VMQ6 1270 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 RPGRQ92834 1020 aaKnown RBP17.31■□□□□ 0.36
SHMT2-234ENST00000557703 FAM89AQ96GI7 184 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 RBM17Q96I25 401 aaKnown RBP17.31■□□□□ 0.36
SHMT2-234ENST00000557703 PLA2G12BQ9BX93 195 aa17.31■□□□□ 0.36
SHMT2-234ENST00000557703 CWF19L2Q2TBE0 894 aaKnown RBP17.3■□□□□ 0.36
SHMT2-234ENST00000557703 SLC4A10Q6U841 1118 aa17.3■□□□□ 0.36
SHMT2-234ENST00000557703 TMC4Q7Z404 712 aa17.3■□□□□ 0.36
SHMT2-234ENST00000557703 RCAN3Q9UKA8 241 aa17.3■□□□□ 0.36
SHMT2-234ENST00000557703 ANKRD31Q8N7Z5 1873 aa17.3■□□□□ 0.36
SHMT2-234ENST00000557703 ABCC12Q96J65 1359 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 UTYO14607 1347 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 GRM8O00222 908 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 CHRNA5P30532 468 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 CC2D2BQ6DHV5 1058 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 C9orf78Q9NZ63 289 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-234ENST00000557703 KIAA1551Q9HCM1 1747 aa17.29■□□□□ 0.36
SHMT2-234ENST00000557703 DLEC1Q9Y238 1755 aa17.28■□□□□ 0.36
SHMT2-234ENST00000557703 BCAR3O75815 825 aa17.28■□□□□ 0.36
SHMT2-234ENST00000557703 BBOX1O75936 387 aa17.28■□□□□ 0.36
SHMT2-234ENST00000557703 HCLS1P14317 486 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-234ENST00000557703 CCDC152Q4G0S7 254 aa17.28■□□□□ 0.36
SHMT2-234ENST00000557703 INTS3Q68E01 1043 aaKnown RBP17.28■□□□□ 0.36
SHMT2-234ENST00000557703 DDX46Q7L014 1031 aaKnown RBP17.28■□□□□ 0.36
SHMT2-234ENST00000557703 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-234ENST00000557703 ZNF622Q969S3 477 aaKnown RBP eCLIP17.28■□□□□ 0.36
SHMT2-234ENST00000557703 BRCA1P38398 1863 aaKnown RBP17.27■□□□□ 0.36
SHMT2-234ENST00000557703 CCDC24Q8N4L8 307 aa17.27■□□□□ 0.36
SHMT2-234ENST00000557703 BCS1LQ9Y276 419 aa17.27■□□□□ 0.36
SHMT2-234ENST00000557703 N4BP2Q86UW6 1770 aaPredicted RBP17.27■□□□□ 0.35
SHMT2-234ENST00000557703 ABCC4O15439 1325 aa17.26■□□□□ 0.35
SHMT2-234ENST00000557703 GOLGB1Q14789 3259 aaKnown RBP17.26■□□□□ 0.35
SHMT2-234ENST00000557703 TRIM27P14373 513 aa17.26■□□□□ 0.35
SHMT2-234ENST00000557703 CASP7P55210 303 aa17.26■□□□□ 0.35
SHMT2-234ENST00000557703 UBE3BQ7Z3V4 1068 aa17.26■□□□□ 0.35
SHMT2-234ENST00000557703 YTHDC1Q96MU7 727 aaKnown RBP17.26■□□□□ 0.35
SHMT2-234ENST00000557703 TMX4Q9H1E5 349 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-234ENST00000557703 RTL9Q8NET4 1388 aa17.26■□□□□ 0.35
SHMT2-234ENST00000557703 FRAT1Q92837 279 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-234ENST00000557703 ARFGEF1Q9Y6D6 1849 aa17.25■□□□□ 0.35
SHMT2-234ENST00000557703 CSF1RP07333 972 aa17.24■□□□□ 0.35
SHMT2-234ENST00000557703 CTSWP56202 376 aa17.24■□□□□ 0.35
SHMT2-234ENST00000557703 PRPF40BQ6NWY9 871 aaKnown RBP17.24■□□□□ 0.35
SHMT2-234ENST00000557703 FTSJ3Q8IY81 847 aaKnown RBP17.24■□□□□ 0.35
SHMT2-234ENST00000557703 SYNE4Q8N205 404 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms