RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 SAMD5Q5TGI4 173 aa9.1□□□□□ -0.95
CKS1BP1-201ENST00000555221 FBXO33Q7Z6M2 555 aa9.1□□□□□ -0.95
CKS1BP1-201ENST00000555221 KLRG1Q96E93 195 aa9.1□□□□□ -0.95
CKS1BP1-201ENST00000555221 FNDC3AQ9Y2H6 1198 aaKnown RBP9.1□□□□□ -0.95
CKS1BP1-201ENST00000555221 SENP3-EIF4A1A0A087X0R7 540 aa9.09□□□□□ -0.95
CKS1BP1-201ENST00000555221 DSC3Q14574 896 aa9.09□□□□□ -0.95
CKS1BP1-201ENST00000555221 FIGNL1Q6PIW4 674 aa9.09□□□□□ -0.95
CKS1BP1-201ENST00000555221 CEP63Q96MT8 703 aa9.09□□□□□ -0.95
CKS1BP1-201ENST00000555221 GPR182O15218 404 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 IGHA2P01877 340 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 NEFLP07196 543 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 P4HBP07237 508 aaKnown RBP9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 PTSQ03393 145 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 TYRO3Q06418 890 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 C8orf34Q49A92 452 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 DACH1Q9UI36 760 aa9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 RTCBQ9Y3I0 505 aaKnown RBP9.08□□□□□ -0.96
CKS1BP1-201ENST00000555221 H7C1W4 665 aa9.07□□□□□ -0.96
CKS1BP1-201ENST00000555221 RIPOR1Q6ZS17 1223 aa9.07□□□□□ -0.96
CKS1BP1-201ENST00000555221 TRIM47Q96LD4 638 aa9.07□□□□□ -0.96
CKS1BP1-201ENST00000555221 C11orf16Q9NQ32 467 aa9.07□□□□□ -0.96
CKS1BP1-201ENST00000555221 SLC35F4A4IF30 521 aa9.06□□□□□ -0.96
CKS1BP1-201ENST00000555221 SOBPA7XYQ1 873 aa9.06□□□□□ -0.96
CKS1BP1-201ENST00000555221 NIF3L1Q9GZT8 377 aa9.06□□□□□ -0.96
CKS1BP1-201ENST00000555221 MAPK8P45983 427 aa9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 ATP2B2Q01814 1243 aa9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 PDE12Q6L8Q7 609 aaKnown RBP9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 CMTR1Q8N1G2 835 aaKnown RBP9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 GMCL1Q96IK5 515 aa9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 NUCKS1Q9H1E3 243 aaKnown RBP9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 GGNBP2Q9H3C7 697 aa9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 BRD7Q9NPI1 651 aa9.05□□□□□ -0.96
CKS1BP1-201ENST00000555221 UBAP1LF5GYI3 381 aa9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 FAM157BP0CG42 384 aa9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 XKR5Q6UX68 686 aa9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 CCDC155Q8N6L0 562 aa9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 ZCCHC2Q9C0B9 1178 aaKnown RBP9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 PCDHGC4Q9Y5F7 938 aa9.04□□□□□ -0.96
CKS1BP1-201ENST00000555221 UNCXA6NJT0 531 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 ATXN7O15265 892 aaPredicted RBP9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 LDHBP07195 334 aaKnown RBP9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 ITGAEP38570 1179 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 KCNQ4P56696 695 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 TRIM22Q8IYM9 498 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 MRRFQ96E11 262 aaKnown RBP9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 USP20Q9Y2K6 914 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 KCNMB2Q9Y691 235 aa9.03□□□□□ -0.96
CKS1BP1-201ENST00000555221 XYLBO75191 536 aa9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 PRPF40AO75400 957 aaKnown RBP9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 ENOX2Q16206 610 aaKnown RBP9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 ZNF438Q7Z4V0 828 aa9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 DNAJC25Q9H1X3 360 aa9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 GMPR2Q9P2T1 348 aaKnown RBP9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 KCNH4Q9UQ05 1017 aa9.02□□□□□ -0.97
CKS1BP1-201ENST00000555221 PNMA6FA0A0J9YX94 578 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 EGFRP00533 1210 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 LAMC2Q13753 1193 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 TRIP4Q15650 581 aaPredicted RBP9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 ALG1LQ6GMV1 187 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 SNX29Q8TEQ0 813 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 CSRNP1Q96S65 589 aa9.01□□□□□ -0.97
CKS1BP1-201ENST00000555221 A6NHS1 94 aa9□□□□□ -0.97
CKS1BP1-201ENST00000555221 KHNYNO15037 678 aaKnown RBP9□□□□□ -0.97
CKS1BP1-201ENST00000555221 EFSO43281 561 aa9□□□□□ -0.97
CKS1BP1-201ENST00000555221 TNFRSF21O75509 655 aa9□□□□□ -0.97
CKS1BP1-201ENST00000555221 TAGLNQ01995 201 aaKnown RBP9□□□□□ -0.97
CKS1BP1-201ENST00000555221 FBF1Q8TES7 1133 aa9□□□□□ -0.97
CKS1BP1-201ENST00000555221 ELP3Q9H9T3 547 aa9□□□□□ -0.97
CKS1BP1-201ENST00000555221 EIF1AYO14602 144 aaKnown RBP8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 THBS1P07996 1170 aa8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 ITGA6P23229 1130 aa8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 VAMP1P23763 118 aa8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 GRNP28799 593 aaKnown RBP8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 XPCQ01831 940 aaPredicted RBP8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 DBN1Q16643 649 aa8.99□□□□□ -0.97
CKS1BP1-201ENST00000555221 DCDC2BA2VCK2 349 aa8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 CPNE3O75131 537 aaKnown RBP8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 TNP2Q05952 138 aa8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 ORC1Q13415 861 aa8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 UBAP2LQ14157 1087 aaKnown RBP8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 Q6ZNB5 142 aa8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 NLRP13Q86W25 1043 aa8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 KIAA1522Q9P206 1035 aaPredicted RBP8.98□□□□□ -0.97
CKS1BP1-201ENST00000555221 C11orf95C9JLR9 678 aaPredicted RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 PHACTR2O75167 634 aa8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 MAPTP10636 758 aaKnown RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 SNRPBP14678 240 aaKnown RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 SFSWAPQ12872 951 aaKnown RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 CCINQ13939 588 aa8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 FOXR1Q6PIV2 292 aa8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 ZNF837Q96EG3 531 aaPredicted RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 DUSP9Q99956 384 aaKnown RBP8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 EFCC1Q9HA90 598 aa8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 PHF24Q9UPV7 400 aa8.97□□□□□ -0.97
CKS1BP1-201ENST00000555221 TTC39BQ5VTQ0 682 aaPredicted RBP8.96□□□□□ -0.98
CKS1BP1-201ENST00000555221 PMEPA1Q969W9 287 aa8.96□□□□□ -0.98
CKS1BP1-201ENST00000555221 FRMD6Q96NE9 622 aa8.96□□□□□ -0.98
CKS1BP1-201ENST00000555221 NDFIP2Q9NV92 336 aa8.96□□□□□ -0.98
CKS1BP1-201ENST00000555221 CUEDC1Q9NWM3 386 aaPredicted RBP8.96□□□□□ -0.98
CKS1BP1-201ENST00000555221 ABI2Q9NYB9 513 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms