RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 USP17L2Q6R6M4 530 aa11.06□□□□□ -0.64
VRK1-203ENST00000555067 USP17L1Q7RTZ2 530 aa11.06□□□□□ -0.64
VRK1-203ENST00000555067 UCN2Q96RP3 112 aa11.06□□□□□ -0.64
VRK1-203ENST00000555067 ATP9BO43861 1147 aa11.05□□□□□ -0.64
VRK1-203ENST00000555067 SHISA2Q6UWI4 295 aa11.05□□□□□ -0.64
VRK1-203ENST00000555067 PROSER2Q86WR7 435 aaPredicted RBP11.05□□□□□ -0.64
VRK1-203ENST00000555067 SFI1A8K8P3 1242 aa11.04□□□□□ -0.64
VRK1-203ENST00000555067 KRTAP19-1Q8IUB9 90 aa11.04□□□□□ -0.64
VRK1-203ENST00000555067 ZNF280CQ8ND82 737 aa11.04□□□□□ -0.64
VRK1-203ENST00000555067 PHACTR1Q9C0D0 580 aa11.04□□□□□ -0.64
VRK1-203ENST00000555067 SLC6A14Q9UN76 642 aa11.04□□□□□ -0.64
VRK1-203ENST00000555067 ZBTB7BO15156 539 aaPredicted RBP11.03□□□□□ -0.64
VRK1-203ENST00000555067 BHMTQ93088 406 aa11.03□□□□□ -0.64
VRK1-203ENST00000555067 CLUAP1Q96AJ1 413 aa11.03□□□□□ -0.64
VRK1-203ENST00000555067 SUSD3Q96L08 255 aa11.03□□□□□ -0.64
VRK1-203ENST00000555067 RAC1P63000 192 aa11.02□□□□□ -0.65
VRK1-203ENST00000555067 FNBP4Q8N3X1 1017 aaPredicted RBP11.02□□□□□ -0.65
VRK1-203ENST00000555067 TP53INP1Q96A56 240 aa11.02□□□□□ -0.65
VRK1-203ENST00000555067 TSPAN10Q9H1Z9 355 aaPredicted RBP11.02□□□□□ -0.65
VRK1-203ENST00000555067 EFCC1Q9HA90 598 aa11.02□□□□□ -0.65
VRK1-203ENST00000555067 KIAA1024Q9UPX6 916 aa11.02□□□□□ -0.65
VRK1-203ENST00000555067 HCN4Q9Y3Q4 1203 aa11.02□□□□□ -0.65
VRK1-203ENST00000555067 AFF1P51825 1210 aaKnown RBP11.01□□□□□ -0.65
VRK1-203ENST00000555067 FMR1NBQ8N0W7 255 aaPredicted RBP11.01□□□□□ -0.65
VRK1-203ENST00000555067 TPCN2Q8NHX9 752 aa11.01□□□□□ -0.65
VRK1-203ENST00000555067 KRTAP9-9Q9BYP9 154 aa11.01□□□□□ -0.65
VRK1-203ENST00000555067 KRTAP9-4Q9BYQ2 154 aa11.01□□□□□ -0.65
VRK1-203ENST00000555067 JPH1Q9HDC5 661 aaPredicted RBP11.01□□□□□ -0.65
VRK1-203ENST00000555067 UBE2OQ9C0C9 1292 aaKnown RBP11□□□□□ -0.65
VRK1-203ENST00000555067 CCDC102BQ68D86 513 aa10.99□□□□□ -0.65
VRK1-203ENST00000555067 GLMNQ92990 594 aa10.99□□□□□ -0.65
VRK1-203ENST00000555067 M0R2N6 131 aa10.98□□□□□ -0.65
VRK1-203ENST00000555067 CLDN10P78369 228 aa10.98□□□□□ -0.65
VRK1-203ENST00000555067 LARGE2Q8N3Y3 721 aa10.98□□□□□ -0.65
VRK1-203ENST00000555067 NUDT8Q8WV74 236 aa10.98□□□□□ -0.65
VRK1-203ENST00000555067 MKRN1Q9UHC7 482 aaKnown RBP10.98□□□□□ -0.65
VRK1-203ENST00000555067 NAGPAQ9UK23 515 aa10.98□□□□□ -0.65
VRK1-203ENST00000555067 PALM3A6NDB9 673 aaPredicted RBP10.97□□□□□ -0.65
VRK1-203ENST00000555067 PSAPL1Q6NUJ1 521 aa10.97□□□□□ -0.65
VRK1-203ENST00000555067 OGFOD1Q8N543 542 aa10.97□□□□□ -0.65
VRK1-203ENST00000555067 CHMP3Q9Y3E7 222 aa10.97□□□□□ -0.65
VRK1-203ENST00000555067 A6NJR5 290 aa10.96□□□□□ -0.65
VRK1-203ENST00000555067 BTLAQ7Z6A9 289 aa10.96□□□□□ -0.65
VRK1-203ENST00000555067 SIX5Q8N196 739 aa10.96□□□□□ -0.65
VRK1-203ENST00000555067 DNAJB12Q9NXW2 375 aaKnown RBP10.96□□□□□ -0.65
VRK1-203ENST00000555067 TBC1D8BQ0IIM8 1120 aa10.95□□□□□ -0.66
VRK1-203ENST00000555067 DMRTC2Q8IXT2 367 aaPredicted RBP10.95□□□□□ -0.66
VRK1-203ENST00000555067 GSX2Q9BZM3 304 aa10.95□□□□□ -0.66
VRK1-203ENST00000555067 RNF112Q9ULX5 631 aa10.95□□□□□ -0.66
VRK1-203ENST00000555067 RBM19Q9Y4C8 960 aaKnown RBP10.95□□□□□ -0.66
VRK1-203ENST00000555067 C21orf2O43822 256 aa10.94□□□□□ -0.66
VRK1-203ENST00000555067 USP21Q9UK80 565 aa10.94□□□□□ -0.66
VRK1-203ENST00000555067 ALDH16A1Q8IZ83 802 aa10.93□□□□□ -0.66
VRK1-203ENST00000555067 STAG2Q8N3U4 1231 aa10.93□□□□□ -0.66
VRK1-203ENST00000555067 DTWD1Q8N5C7 304 aa10.93□□□□□ -0.66
VRK1-203ENST00000555067 GOLGA2P5Q9HBQ8 144 aa10.93□□□□□ -0.66
VRK1-203ENST00000555067 MAFBQ9Y5Q3 323 aaPredicted RBP10.93□□□□□ -0.66
VRK1-203ENST00000555067 BTBD11A6QL63 1104 aa10.92□□□□□ -0.66
VRK1-203ENST00000555067 RGS9O75916 674 aaPredicted RBP10.92□□□□□ -0.66
VRK1-203ENST00000555067 HIF1AQ16665 826 aa10.92□□□□□ -0.66
VRK1-203ENST00000555067 WFDC12Q8WWY7 111 aa10.92□□□□□ -0.66
VRK1-203ENST00000555067 IGFLR1Q9H665 355 aa10.92□□□□□ -0.66
VRK1-203ENST00000555067 DKK1O94907 266 aa10.91□□□□□ -0.66
VRK1-203ENST00000555067 GRIK5Q16478 980 aa10.91□□□□□ -0.66
VRK1-203ENST00000555067 IER5Q5VY09 327 aa10.91□□□□□ -0.66
VRK1-203ENST00000555067 MSL1Q68DK7 614 aa10.91□□□□□ -0.66
VRK1-203ENST00000555067 ZNF594Q96JF6 807 aaPredicted RBP10.91□□□□□ -0.66
VRK1-203ENST00000555067 CALR3Q96L12 384 aaKnown RBP10.91□□□□□ -0.66
VRK1-203ENST00000555067 TFIP11Q9UBB9 837 aaKnown RBP10.91□□□□□ -0.66
VRK1-203ENST00000555067 PPP1R12BO60237 982 aaPredicted RBP10.9□□□□□ -0.66
VRK1-203ENST00000555067 FBXO11Q86XK2 927 aa10.9□□□□□ -0.66
VRK1-203ENST00000555067 C2orf49Q9BVC5 232 aaPredicted RBP10.9□□□□□ -0.66
VRK1-203ENST00000555067 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.9□□□□□ -0.66
VRK1-203ENST00000555067 NOS3P29474 1203 aa10.89□□□□□ -0.67
VRK1-203ENST00000555067 RASA1P20936 1047 aa10.88□□□□□ -0.67
VRK1-203ENST00000555067 CCINQ13939 588 aa10.88□□□□□ -0.67
VRK1-203ENST00000555067 TSEN2Q8NCE0 465 aaKnown RBP10.88□□□□□ -0.67
VRK1-203ENST00000555067 LPIN3Q9BQK8 851 aa10.88□□□□□ -0.67
VRK1-203ENST00000555067 FRRS1LQ9P0K9 344 aa10.88□□□□□ -0.67
VRK1-203ENST00000555067 DMGDHQ9UI17 866 aaKnown RBP10.88□□□□□ -0.67
VRK1-203ENST00000555067 NFKB1P19838 968 aa10.87□□□□□ -0.67
VRK1-203ENST00000555067 GRNP28799 593 aaKnown RBP10.87□□□□□ -0.67
VRK1-203ENST00000555067 IREB2P48200 963 aaKnown RBP10.87□□□□□ -0.67
VRK1-203ENST00000555067 PPP1R12CQ9BZL4 782 aa10.87□□□□□ -0.67
VRK1-203ENST00000555067 ATAD2Q6PL18 1390 aa10.87□□□□□ -0.67
VRK1-203ENST00000555067 SEC13P55735 322 aa10.86□□□□□ -0.67
VRK1-203ENST00000555067 MCTP1Q6DN14 999 aa10.86□□□□□ -0.67
VRK1-203ENST00000555067 LARP1Q6PKG0 1096 aaKnown RBP10.86□□□□□ -0.67
VRK1-203ENST00000555067 MEGF10Q96KG7 1140 aa10.86□□□□□ -0.67
VRK1-203ENST00000555067 PNMA5Q96PV4 448 aa10.86□□□□□ -0.67
VRK1-203ENST00000555067 KRTAP4-8A0A0G2JLE6 195 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 IGF2-ASQ6U949 168 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 FAM35AQ86V20 835 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 GAS2L2Q8NHY3 880 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 TTC9Q92623 222 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 BCS1LQ9Y276 419 aa10.85□□□□□ -0.67
VRK1-203ENST00000555067 TGFBR3LH3BV60 316 aa10.84□□□□□ -0.67
VRK1-203ENST00000555067 MAP3K6O95382 1288 aa10.84□□□□□ -0.67
VRK1-203ENST00000555067 PCSK7Q16549 785 aa10.84□□□□□ -0.67
VRK1-203ENST00000555067 PRR23CQ6ZRP0 262 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms