RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 TAF1DQ9H5J8 278 aaPredicted RBP15.24■□□□□ 0.03
PRPF40B-212ENST00000551111 ALDH1B1P30837 517 aa15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 IARSP41252 1262 aaKnown RBP15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 NEUROD2Q15784 382 aa15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 GIGYF2Q6Y7W6 1299 aaKnown RBP15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 RTKN2Q8IZC4 609 aa15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
PRPF40B-212ENST00000551111 FZD9O00144 591 aa15.22■□□□□ 0.03
PRPF40B-212ENST00000551111 HOXA10P31260 410 aaPredicted RBP15.22■□□□□ 0.03
PRPF40B-212ENST00000551111 NYXQ9GZU5 481 aa15.22■□□□□ 0.03
PRPF40B-212ENST00000551111 RNF123Q5XPI4 1314 aa15.21■□□□□ 0.03
PRPF40B-212ENST00000551111 PNNQ9H307 717 aaKnown RBP15.21■□□□□ 0.03
PRPF40B-212ENST00000551111 MKRN1Q9UHC7 482 aaKnown RBP15.21■□□□□ 0.03
PRPF40B-212ENST00000551111 PASKQ96RG2 1323 aa15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 RIC1Q4ADV7 1423 aa15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 ITGBL1O95965 494 aaPredicted RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 HSPA1AP0DMV8 641 aaKnown RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 HSPA1BP0DMV9 641 aaKnown RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 RALBP1Q15311 655 aa15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 EAPPQ56P03 285 aaPredicted RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 RPGRQ92834 1020 aaKnown RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 TRIM35Q9UPQ4 493 aa15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 IBTKQ9P2D0 1353 aaPredicted RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
PRPF40B-212ENST00000551111 ERBB4Q15303 1308 aa15.19■□□□□ 0.02
PRPF40B-212ENST00000551111 AIMP1Q12904 312 aaKnown RBP15.19■□□□□ 0.02
PRPF40B-212ENST00000551111 COPS6Q7L5N1 327 aa15.19■□□□□ 0.02
PRPF40B-212ENST00000551111 LDHDQ86WU2 507 aa15.19■□□□□ 0.02
PRPF40B-212ENST00000551111 PSMD1Q99460 953 aa15.19■□□□□ 0.02
PRPF40B-212ENST00000551111 IQCA1LA6NCM1 817 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 EPHX2P34913 555 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 MAP1SQ66K74 1059 aaPredicted RBP15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 XAGE3Q8WTP9 111 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 CRAMP1Q96RY5 1269 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 CREBZFQ9NS37 354 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 HACL1Q9UJ83 578 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 COL4A1P02462 1669 aa15.18■□□□□ 0.02
PRPF40B-212ENST00000551111 CHL1O00533 1208 aa15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 PPEF1O14829 653 aaPredicted RBP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 HCLS1P14317 486 aaPredicted RBP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 FMR1Q06787 632 aaKnown RBP eCLIP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 SLC10A5Q5PT55 438 aa15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 RBM17Q96I25 401 aaKnown RBP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 ADAMTS8Q9UP79 889 aa15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 CLEC11AQ9Y240 323 aa15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 LAS1LQ9Y4W2 734 aaKnown RBP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 GJA3Q9Y6H8 435 aa15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 MYBBP1AQ9BQG0 1328 aaKnown RBP15.17■□□□□ 0.02
PRPF40B-212ENST00000551111 TRPM7Q96QT4 1865 aa15.16■□□□□ 0.02
PRPF40B-212ENST00000551111 PPP1R42Q7Z4L9 355 aa15.16■□□□□ 0.02
PRPF40B-212ENST00000551111 NLRP10Q86W26 655 aa15.16■□□□□ 0.02
PRPF40B-212ENST00000551111 UTP14AQ9BVJ6 771 aaKnown RBP15.16■□□□□ 0.02
PRPF40B-212ENST00000551111 ABCC4O15439 1325 aa15.16■□□□□ 0.02
PRPF40B-212ENST00000551111 POLR2AP24928 1970 aaKnown RBP15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 EPS15P42566 896 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 PARP10Q53GL7 1025 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 GPC2Q8N158 579 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 LARGE2Q8N3Y3 721 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 JDP2Q8WYK2 163 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 NLRP3Q96P20 1036 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 BABAM1Q9NWV8 329 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 CHPF2Q9P2E5 772 aa15.15■□□□□ 0.02
PRPF40B-212ENST00000551111 CNTNAP1P78357 1384 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 CAPN15O75808 1086 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 SCNN1DP51172 638 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 AOC3Q16853 763 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 CC2D2BQ6DHV5 1058 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 CNTROBQ8N137 903 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 RUNDC1Q96C34 613 aa15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 DDX21Q9NR30 783 aaKnown RBP eCLIP15.14■□□□□ 0.01
PRPF40B-212ENST00000551111 VEGFBP49765 207 aa15.13■□□□□ 0.01
PRPF40B-212ENST00000551111 TCIRG1Q13488 830 aa15.13■□□□□ 0.01
PRPF40B-212ENST00000551111 ATP6V0A2Q9Y487 856 aa15.13■□□□□ 0.01
PRPF40B-212ENST00000551111 TMEM88BA6NKF7 163 aa15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 EIF6P56537 245 aaKnown RBP15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 LMOD3Q0VAK6 560 aa15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 TNS4Q8IZW8 715 aa15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 TRMT112Q9UI30 125 aaKnown RBP15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 LRRC37AA6NMS7 1700 aa15.12■□□□□ 0.01
PRPF40B-212ENST00000551111 DUOX1Q9NRD9 1551 aa15.11■□□□□ 0.01
PRPF40B-212ENST00000551111 ATP5J2-PTCD1G3V325 749 aa15.11■□□□□ 0.01
PRPF40B-212ENST00000551111 FOXN1O15353 648 aa15.11■□□□□ 0.01
PRPF40B-212ENST00000551111 PPIP5K2O43314 1243 aa15.11■□□□□ 0.01
PRPF40B-212ENST00000551111 CXCL9Q07325 125 aa15.1■□□□□ 0.01
PRPF40B-212ENST00000551111 PNMA8AQ86V59 439 aaPredicted RBP15.1■□□□□ 0.01
PRPF40B-212ENST00000551111 NIM1KQ8IY84 436 aa15.1■□□□□ 0.01
PRPF40B-212ENST00000551111 TRAF5O00463 557 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 WDR43Q15061 677 aaKnown RBP eCLIP15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 RTL5Q5HYW3 569 aaPredicted RBP15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 HDGFL1Q5TGJ6 251 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 DUSP27Q5VZP5 1158 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 SP8Q8IXZ3 490 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 FAM89AQ96GI7 184 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 ISCA1Q9BUE6 129 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 RTFDC1Q9BY42 306 aaPredicted RBP15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 PRKRIP1Q9H875 184 aaPredicted RBP15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 MBIPQ9NS73 344 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 SH3TC1Q8TE82 1336 aa15.09■□□□□ 0.01
PRPF40B-212ENST00000551111 SCN9AQ15858 1988 aa15.08■□□□□ 0
PRPF40B-212ENST00000551111 SHTN1A0MZ66 631 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms