RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 KIF13BQ9NQT8 1826 aa20.65■□□□□ 0.9
CHMP1A-209ENST00000550872 IBTKQ9P2D0 1353 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-209ENST00000550872 DPEP1P16444 411 aa20.65■□□□□ 0.9
CHMP1A-209ENST00000550872 PDE6BP35913 854 aa20.65■□□□□ 0.9
CHMP1A-209ENST00000550872 CCDC191Q8NCU4 936 aa20.65■□□□□ 0.9
CHMP1A-209ENST00000550872 PTPRCP08575 1304 aa20.64■□□□□ 0.89
CHMP1A-209ENST00000550872 CHRNA5P30532 468 aa20.64■□□□□ 0.89
CHMP1A-209ENST00000550872 BRPF1P55201 1214 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-209ENST00000550872 ZNF784Q8NCA9 323 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-209ENST00000550872 CWC25Q9NXE8 425 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-209ENST00000550872 RNF123Q5XPI4 1314 aa20.63■□□□□ 0.89
CHMP1A-209ENST00000550872 IGKV5-2P06315 115 aa20.63■□□□□ 0.89
CHMP1A-209ENST00000550872 C2CD5Q86YS7 1000 aa20.63■□□□□ 0.89
CHMP1A-209ENST00000550872 NOB1Q9ULX3 412 aaKnown RBP20.63■□□□□ 0.89
CHMP1A-209ENST00000550872 GOLGB1Q14789 3259 aaKnown RBP20.63■□□□□ 0.89
CHMP1A-209ENST00000550872 PXDNLA1KZ92 1463 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 SH3TC1Q8TE82 1336 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 H0YIN7 160 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 BCAR3O75815 825 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 CWF19L2Q2TBE0 894 aaKnown RBP20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 SLC4A10Q6U841 1118 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 SYNE4Q8N205 404 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 LINS1Q8NG48 757 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 WWC3Q9ULE0 1092 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 PDZRN3Q9UPQ7 1066 aa20.62■□□□□ 0.89
CHMP1A-209ENST00000550872 ABCC12Q96J65 1359 aa20.61■□□□□ 0.89
CHMP1A-209ENST00000550872 NEURL1BA8MQ27 555 aa20.61■□□□□ 0.89
CHMP1A-209ENST00000550872 RTL5Q5HYW3 569 aaPredicted RBP20.61■□□□□ 0.89
CHMP1A-209ENST00000550872 PELP1Q8IZL8 1130 aaKnown RBP20.61■□□□□ 0.89
CHMP1A-209ENST00000550872 FAM89AQ96GI7 184 aa20.61■□□□□ 0.89
CHMP1A-209ENST00000550872 KIF16BQ96L93 1317 aa20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 N4BP2Q86UW6 1770 aaPredicted RBP20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 SLC10A5Q5PT55 438 aa20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 BEND3Q5T5X7 828 aa20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 ZBTB38Q8NAP3 1195 aaPredicted RBP20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 ANKRD31Q8N7Z5 1873 aa20.6■□□□□ 0.89
CHMP1A-209ENST00000550872 PCCAP05165 728 aaPredicted RBP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 HCLS1P14317 486 aaPredicted RBP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 KCNA3P22001 575 aa20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 JARID2Q92833 1246 aaPredicted RBP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 FRAT1Q92837 279 aaPredicted RBP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 ZNF622Q969S3 477 aaKnown RBP eCLIP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 NLRP3Q96P20 1036 aa20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 API5Q9BZZ5 524 aaKnown RBP20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 PIM2Q9P1W9 311 aa20.59■□□□□ 0.89
CHMP1A-209ENST00000550872 KLRG2A4D1S0 409 aaPredicted RBP20.58■□□□□ 0.89
CHMP1A-209ENST00000550872 IPO8O15397 1037 aaKnown RBP20.58■□□□□ 0.89
CHMP1A-209ENST00000550872 GPR162Q16538 588 aa20.58■□□□□ 0.89
CHMP1A-209ENST00000550872 SRCIN1Q9C0H9 1055 aa20.58■□□□□ 0.89
CHMP1A-209ENST00000550872 IRS4O14654 1257 aaPredicted RBP20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 SRGNP10124 158 aa20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 GCKRQ14397 625 aa20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 ARHGAP45Q92619 1136 aa20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 KIAA1551Q9HCM1 1747 aa20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 CHD4Q14839 1912 aa20.57■□□□□ 0.88
CHMP1A-209ENST00000550872 ALDH1L1O75891 902 aa20.56■□□□□ 0.88
CHMP1A-209ENST00000550872 MASTLQ96GX5 879 aa20.56■□□□□ 0.88
CHMP1A-209ENST00000550872 BCS1LQ9Y276 419 aa20.56■□□□□ 0.88
CHMP1A-209ENST00000550872 RIC1Q4ADV7 1423 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 H7C1W4 665 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 HSP90B1P14625 803 aaKnown RBP20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 NPR1P16066 1061 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 DALRD3Q5D0E6 543 aaKnown RBP20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 STYK1Q6J9G0 422 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 C3orf67Q6ZVT6 689 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 UBE3BQ7Z3V4 1068 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 TTLL6Q8N841 843 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 RCAN3Q9UKA8 241 aa20.55■□□□□ 0.88
CHMP1A-209ENST00000550872 CRY2Q49AN0 593 aa20.54■□□□□ 0.88
CHMP1A-209ENST00000550872 RPGRQ92834 1020 aaKnown RBP20.54■□□□□ 0.88
CHMP1A-209ENST00000550872 CNKSR1Q969H4 720 aa20.54■□□□□ 0.88
CHMP1A-209ENST00000550872 YBX3P16989 372 aaKnown RBP eCLIP20.53■□□□□ 0.886e-9■■□□□ 14.5
CHMP1A-209ENST00000550872 ZKSCAN2Q63HK3 967 aa20.53■□□□□ 0.88
CHMP1A-209ENST00000550872 ATF7IPQ6VMQ6 1270 aa20.53■□□□□ 0.88
CHMP1A-209ENST00000550872 C9orf78Q9NZ63 289 aaPredicted RBP20.53■□□□□ 0.88
CHMP1A-209ENST00000550872 CDHR2Q9BYE9 1310 aa20.53■□□□□ 0.88
CHMP1A-209ENST00000550872 TNRC6CQ9HCJ0 1690 aaKnown RBP20.52■□□□□ 0.88
CHMP1A-209ENST00000550872 RBM17Q96I25 401 aaKnown RBP20.52■□□□□ 0.88
CHMP1A-209ENST00000550872 COL11A2P13942 1736 aaPredicted RBP20.51■□□□□ 0.87
CHMP1A-209ENST00000550872 PDE8AO60658 829 aa20.51■□□□□ 0.87
CHMP1A-209ENST00000550872 TRIM27P14373 513 aa20.51■□□□□ 0.87
CHMP1A-209ENST00000550872 ALDH1B1P30837 517 aa20.51■□□□□ 0.87
CHMP1A-209ENST00000550872 CCT4P50991 539 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-209ENST00000550872 GRM8O00222 908 aa20.5■□□□□ 0.87
CHMP1A-209ENST00000550872 GRIN3BO60391 1043 aa20.5■□□□□ 0.87
CHMP1A-209ENST00000550872 HOXA10P31260 410 aaPredicted RBP20.5■□□□□ 0.87
CHMP1A-209ENST00000550872 CLUAP1Q96AJ1 413 aa20.5■□□□□ 0.87
CHMP1A-209ENST00000550872 TNNQ9UQP3 1299 aa20.5■□□□□ 0.87
CHMP1A-209ENST00000550872 DLEC1Q9Y238 1755 aa20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 CASP7P55210 303 aa20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 SF3B3Q15393 1217 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 DDX46Q7L014 1031 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 CRAMP1Q96RY5 1269 aa20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 ZNF219Q9P2Y4 722 aaPredicted RBP20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 BRCA1P38398 1863 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-209ENST00000550872 DDX60Q8IY21 1712 aaKnown RBP20.48■□□□□ 0.87
CHMP1A-209ENST00000550872 PRPF40BQ6NWY9 871 aaKnown RBP20.48■□□□□ 0.87
CHMP1A-209ENST00000550872 CCDC85AQ96PX6 553 aaPredicted RBP20.47■□□□□ 0.87
CHMP1A-209ENST00000550872 PLA2G12BQ9BX93 195 aa20.47■□□□□ 0.87
CHMP1A-209ENST00000550872 ABCC4O15439 1325 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 157.4 ms