RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 KIAA0232Q92628 1395 aa15.21■□□□□ 0.03
MSH6-210ENST00000540021 CCDC66A2RUB6 948 aa15.21■□□□□ 0.03
MSH6-210ENST00000540021 POLR3DP05423 398 aaPredicted RBP15.21■□□□□ 0.03
MSH6-210ENST00000540021 TMC6Q7Z403 805 aa15.21■□□□□ 0.03
MSH6-210ENST00000540021 LSG1Q9H089 658 aaKnown RBP15.21■□□□□ 0.03
MSH6-210ENST00000540021 AOPEPQ8N6M6 819 aa15.21■□□□□ 0.02
MSH6-210ENST00000540021 GTPBP4Q9BZE4 634 aaKnown RBP15.21■□□□□ 0.02
MSH6-210ENST00000540021 ARGLU1Q9NWB6 273 aaPredicted RBP15.21■□□□□ 0.02
MSH6-210ENST00000540021 NR1I2O75469 434 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 SFPQP23246 707 aaKnown RBP eCLIP15.2■□□□□ 0.02
MSH6-210ENST00000540021 PLEKHO1Q53GL0 409 aaPredicted RBP15.2■□□□□ 0.02
MSH6-210ENST00000540021 HSP90AA4PQ58FG1 418 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 Q6ZUG5 572 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 TTC5Q8N0Z6 440 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 NEK1Q96PY6 1258 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 CCDC69A6NI79 296 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 SMTNL1A8MU46 457 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 ZNF75DP51815 510 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 CCDC129Q6ZRS4 1044 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 DBF4Q9UBU7 674 aaPredicted RBP15.2■□□□□ 0.02
MSH6-210ENST00000540021 PAXBP1Q9Y5B6 917 aa15.2■□□□□ 0.02
MSH6-210ENST00000540021 CCDC85AQ96PX6 553 aaPredicted RBP15.19■□□□□ 0.02
MSH6-210ENST00000540021 ANO10Q9NW15 660 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 AMOTL2Q9Y2J4 779 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 ATP10DQ9P241 1426 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 URI1O94763 535 aaPredicted RBP15.19■□□□□ 0.02
MSH6-210ENST00000540021 SSH3Q8TE77 659 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 LEO1Q8WVC0 666 aaPredicted RBP15.19■□□□□ 0.02
MSH6-210ENST00000540021 MYD88Q99836 296 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 LGR6Q9HBX8 967 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 CEBPAP49715 358 aaPredicted RBP15.19■□□□□ 0.02
MSH6-210ENST00000540021 FKBP4Q02790 459 aaKnown RBP eCLIP15.19■□□□□ 0.02
MSH6-210ENST00000540021 KRT32Q14532 448 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 STX1AQ16623 288 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 TEX35Q5T0J7 233 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 RALYLQ86SE5 291 aaKnown RBP15.19■□□□□ 0.02
MSH6-210ENST00000540021 NLRP2Q9NX02 1062 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 STAP2Q9UGK3 403 aa15.19■□□□□ 0.02
MSH6-210ENST00000540021 SLC27A2O14975 620 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 KCNQ3O43525 872 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 DMTNQ08495 405 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 ESCO1Q5FWF5 840 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 ZSCAN25Q6NSZ9 544 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 IL17REQ8NFR9 667 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 UBXN4Q92575 508 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 SHPRHQ149N8 1683 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 SNW1Q13573 536 aaKnown RBP15.18■□□□□ 0.02
MSH6-210ENST00000540021 CFAP100Q494V2 611 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 MRVI1Q9Y6F6 885 aa15.18■□□□□ 0.02
MSH6-210ENST00000540021 SKIDA1Q1XH10 827 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 HAND2P61296 217 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 KRT222Q8N1A0 295 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 ADGRB3O60242 1522 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 ATP5J2-PTCD1G3V325 749 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 PES1O00541 588 aaKnown RBP15.17■□□□□ 0.02
MSH6-210ENST00000540021 PTCD1O75127 700 aaKnown RBP15.17■□□□□ 0.02
MSH6-210ENST00000540021 ELF2Q15723 593 aa15.17■□□□□ 0.02
MSH6-210ENST00000540021 LRRC59Q96AG4 307 aaKnown RBP15.17■□□□□ 0.02
MSH6-210ENST00000540021 NFXL1Q6ZNB6 911 aa15.16■□□□□ 0.02
MSH6-210ENST00000540021 OGFRQ9NZT2 677 aa15.16■□□□□ 0.02
MSH6-210ENST00000540021 TTC41PQ6P2S7 1318 aa15.16■□□□□ 0.02
MSH6-210ENST00000540021 ABCC3O15438 1527 aa15.16■□□□□ 0.02
MSH6-210ENST00000540021 GTF2F1P35269 517 aaKnown RBP eCLIP15.16■□□□□ 0.022e-7■■■■■ 27.6
MSH6-210ENST00000540021 GTF3C6Q969F1 213 aa15.16■□□□□ 0.02
MSH6-210ENST00000540021 FLT4P35916 1363 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 GOLIM4O00461 696 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 APOBRQ0VD83 1088 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 ARID5BQ14865 1188 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 NCOA5Q9HCD5 579 aaKnown RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 PPRC1Q5VV67 1664 aaKnown RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 A0A0D9SFI3 127 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 SLC39A6Q13433 755 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 ZNF710Q8N1W2 664 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 CACTINQ8WUQ7 758 aaKnown RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 ZFP91Q96JP5 570 aaPredicted RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 LMOD1P29536 600 aaPredicted RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 SYT10Q6XYQ8 523 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 PI4K2BQ8TCG2 481 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 RAPGEF4Q8WZA2 1011 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 KCNF1Q9H3M0 494 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 CLSTN2Q9H4D0 955 aa15.15■□□□□ 0.02
MSH6-210ENST00000540021 BICC1Q9H694 974 aaKnown RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 ZNF215Q9UL58 517 aaPredicted RBP15.15■□□□□ 0.02
MSH6-210ENST00000540021 PRR36Q9H6K5 1346 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 A0A1B0GVL5 298 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 TRDNQ13061 729 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 OLFM4Q6UX06 510 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 UBE3BQ7Z3V4 1068 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 ZSWIM4Q9H7M6 989 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 SSH2Q76I76 1423 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 METP08581 1390 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 TRIM29Q14134 588 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 BBXQ8WY36 941 aaPredicted RBP15.14■□□□□ 0.01
MSH6-210ENST00000540021 FTOQ9C0B1 505 aaKnown RBP eCLIP15.14■□□□□ 0.01
MSH6-210ENST00000540021 DNAI1Q9UI46 699 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 GRM8O00222 908 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 RPS6KB1P23443 525 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 OTUD7BQ6GQQ9 843 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 FEZ1Q99689 392 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 SNRKQ9NRH2 765 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms