RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 RNMTO43148 476 aaKnown RBP12.57□□□□□ -0.4
USP28-205ENST00000537706 CAMTA2O94983 1202 aa12.57□□□□□ -0.4
USP28-205ENST00000537706 CACNA1SQ13698 1873 aa12.57□□□□□ -0.4
USP28-205ENST00000537706 BCORQ6W2J9 1755 aa12.56□□□□□ -0.4
USP28-205ENST00000537706 FAM155AB1AL88 458 aaPredicted RBP12.56□□□□□ -0.4
USP28-205ENST00000537706 CLEC4GQ6UXB4 293 aa12.56□□□□□ -0.4
USP28-205ENST00000537706 DZIP3Q86Y13 1208 aaKnown RBP12.56□□□□□ -0.4
USP28-205ENST00000537706 VPS33BQ9H267 617 aa12.56□□□□□ -0.4
USP28-205ENST00000537706 SCN7AQ01118 1682 aa12.56□□□□□ -0.4
USP28-205ENST00000537706 TNNT2P45379 298 aaPredicted RBP12.56□□□□□ -0.4
USP28-205ENST00000537706 USP48Q86UV5 1035 aa12.56□□□□□ -0.4
USP28-205ENST00000537706 PPIP5K2O43314 1243 aa12.55□□□□□ -0.4
USP28-205ENST00000537706 INTS3Q68E01 1043 aaKnown RBP12.55□□□□□ -0.4
USP28-205ENST00000537706 SULT6B1Q6IMI4 303 aa12.55□□□□□ -0.4
USP28-205ENST00000537706 CARD14Q9BXL6 1004 aa12.55□□□□□ -0.4
USP28-205ENST00000537706 H7C1D1 291 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 SLC10A3P09131 477 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 GMPSP49915 693 aaPredicted RBP12.54□□□□□ -0.4
USP28-205ENST00000537706 TNIP1Q15025 636 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 CSRNP1Q96S65 589 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 LGR6Q9HBX8 967 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 AEBP1Q8IUX7 1158 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 RPGRQ92834 1020 aaKnown RBP12.54□□□□□ -0.4
USP28-205ENST00000537706 NPC1L1Q9UHC9 1359 aa12.54□□□□□ -0.4
USP28-205ENST00000537706 ZNRF3Q9ULT6 936 aa12.53□□□□□ -0.4
USP28-205ENST00000537706 MRC1P22897 1456 aa12.53□□□□□ -0.4
USP28-205ENST00000537706 ZNF296Q8WUU4 475 aaPredicted RBP12.52□□□□□ -0.4
USP28-205ENST00000537706 KRT26Q7Z3Y9 468 aa12.52□□□□□ -0.41
USP28-205ENST00000537706 DCPSQ96C86 337 aaKnown RBP12.52□□□□□ -0.41
USP28-205ENST00000537706 COLQQ9Y215 455 aaPredicted RBP12.52□□□□□ -0.41
USP28-205ENST00000537706 NIP7Q9Y221 180 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP28-205ENST00000537706 HEG1Q9ULI3 1381 aa12.52□□□□□ -0.41
USP28-205ENST00000537706 SCN11AQ9UI33 1791 aa12.51□□□□□ -0.41
USP28-205ENST00000537706 RGL2O15211 777 aa12.51□□□□□ -0.41
USP28-205ENST00000537706 CXCL9Q07325 125 aa12.51□□□□□ -0.41
USP28-205ENST00000537706 RBM17Q96I25 401 aaKnown RBP12.51□□□□□ -0.41
USP28-205ENST00000537706 FAM177BA6PVY3 158 aa12.5□□□□□ -0.41
USP28-205ENST00000537706 NYXQ9GZU5 481 aa12.5□□□□□ -0.41
USP28-205ENST00000537706 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
USP28-205ENST00000537706 AOC3Q16853 763 aa12.5□□□□□ -0.41
USP28-205ENST00000537706 NOM1Q5C9Z4 860 aaKnown RBP12.5□□□□□ -0.41
USP28-205ENST00000537706 FMNL2Q96PY5 1086 aa12.5□□□□□ -0.41
USP28-205ENST00000537706 CNOT7Q9UIV1 285 aaKnown RBP12.5□□□□□ -0.41
USP28-205ENST00000537706 FKTNO75072 461 aa12.49□□□□□ -0.41
USP28-205ENST00000537706 A1BGP04217 495 aa12.49□□□□□ -0.41
USP28-205ENST00000537706 HIRAP54198 1017 aaPredicted RBP12.49□□□□□ -0.41
USP28-205ENST00000537706 TEFQ10587 303 aa12.49□□□□□ -0.41
USP28-205ENST00000537706 TRPM4Q8TD43 1214 aa12.49□□□□□ -0.41
USP28-205ENST00000537706 GPR25O00155 361 aa12.49□□□□□ -0.41
USP28-205ENST00000537706 ZNF496Q96IT1 587 aaPredicted RBP12.49□□□□□ -0.41
USP28-205ENST00000537706 SNED1Q8TER0 1413 aa12.48□□□□□ -0.41
USP28-205ENST00000537706 TBC1D8O95759 1140 aa12.48□□□□□ -0.41
USP28-205ENST00000537706 COL4A5P29400 1685 aa12.48□□□□□ -0.41
USP28-205ENST00000537706 AKAP11Q9UKA4 1901 aa12.48□□□□□ -0.41
USP28-205ENST00000537706 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 ZNF790Q6PG37 636 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 RASAL3Q86YV0 1011 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 MICALL2Q8IY33 904 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 KIF7Q2M1P5 1343 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 MNX1P50219 401 aaPredicted RBP12.47□□□□□ -0.41
USP28-205ENST00000537706 SULF1Q8IWU6 871 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 CRAMP1Q96RY5 1269 aa12.47□□□□□ -0.41
USP28-205ENST00000537706 TCERG1O14776 1098 aaKnown RBP12.46□□□□□ -0.42
USP28-205ENST00000537706 RAD17O75943 681 aa12.46□□□□□ -0.42
USP28-205ENST00000537706 HOXA10P31260 410 aaPredicted RBP12.46□□□□□ -0.42
USP28-205ENST00000537706 FKBP1BP68106 108 aa12.46□□□□□ -0.42
USP28-205ENST00000537706 POTEFA5A3E0 1075 aa12.45□□□□□ -0.42
USP28-205ENST00000537706 TMEM106CQ9BVX2 250 aa12.45□□□□□ -0.42
USP28-205ENST00000537706 DPF2Q92785 391 aa12.45□□□□□ -0.42
USP28-205ENST00000537706 ADM5C9JUS6 153 aa12.44□□□□□ -0.42
USP28-205ENST00000537706 SREBF2Q12772 1141 aa12.44□□□□□ -0.42
USP28-205ENST00000537706 DPP8Q6V1X1 898 aaPredicted RBP12.43□□□□□ -0.42
USP28-205ENST00000537706 TRIM17Q9Y577 477 aa12.43□□□□□ -0.42
USP28-205ENST00000537706 TBC1D10BQ4KMP7 808 aaPredicted RBP12.43□□□□□ -0.42
USP28-205ENST00000537706 ATP6V0A2Q9Y487 856 aa12.43□□□□□ -0.42
USP28-205ENST00000537706 PITPNM2Q9BZ72 1349 aa12.42□□□□□ -0.42
USP28-205ENST00000537706 IL13P35225 146 aa12.42□□□□□ -0.42
USP28-205ENST00000537706 KIAA2012Q0VF49 1180 aa12.42□□□□□ -0.42
USP28-205ENST00000537706 MTHFSDQ2M296 383 aaKnown RBP12.42□□□□□ -0.42
USP28-205ENST00000537706 SAMD7Q7Z3H4 446 aa12.42□□□□□ -0.42
USP28-205ENST00000537706 RTFDC1Q9BY42 306 aaPredicted RBP12.42□□□□□ -0.42
USP28-205ENST00000537706 UBR2Q8IWV8 1755 aa12.42□□□□□ -0.42
USP28-205ENST00000537706 PRAMEF22A3QJZ6 481 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 ALDH1A1P00352 501 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 RPS12P25398 132 aaKnown RBP12.41□□□□□ -0.42
USP28-205ENST00000537706 RBM26Q5T8P6 1007 aaKnown RBP12.41□□□□□ -0.42
USP28-205ENST00000537706 DLK2Q6UY11 383 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 MORC1Q86VD1 984 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 CDCA5Q96FF9 252 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 RIC1Q4ADV7 1423 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 TM4SF4P48230 202 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 NUTM1Q86Y26 1132 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 MPNDQ8N594 471 aa12.41□□□□□ -0.42
USP28-205ENST00000537706 EN2P19622 333 aaPredicted RBP12.4□□□□□ -0.42
USP28-205ENST00000537706 CHRDL2Q6WN34 429 aa12.4□□□□□ -0.42
USP28-205ENST00000537706 CFHR5Q9BXR6 569 aa12.4□□□□□ -0.42
USP28-205ENST00000537706 ABCC12Q96J65 1359 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 H0YGN5 161 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 PIP4K2AP48426 406 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms