RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 DICER1Q9UPY3 1922 aaKnown RBP11.1□□□□□ -0.63
USP28-203ENST00000537490 FZD9O00144 591 aa11.1□□□□□ -0.63
USP28-203ENST00000537490 LMOD3Q0VAK6 560 aa11.1□□□□□ -0.63
USP28-203ENST00000537490 KRT24Q2M2I5 525 aa11.1□□□□□ -0.63
USP28-203ENST00000537490 RPGRQ92834 1020 aaKnown RBP11.1□□□□□ -0.63
USP28-203ENST00000537490 IBTKQ9P2D0 1353 aaPredicted RBP11.1□□□□□ -0.63
USP28-203ENST00000537490 ARFGEF2Q9Y6D5 1785 aa11.1□□□□□ -0.63
USP28-203ENST00000537490 SNED1Q8TER0 1413 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 CACNA1SQ13698 1873 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 IQCA1LA6NCM1 817 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 CHL1O00533 1208 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 TCERG1O14776 1098 aaKnown RBP11.09□□□□□ -0.63
USP28-203ENST00000537490 PARP10Q53GL7 1025 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 SLC10A5Q5PT55 438 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 CC2D2BQ6DHV5 1058 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 COPS6Q7L5N1 327 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 PPP1R42Q7Z4L9 355 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 RBM17Q96I25 401 aaKnown RBP11.09□□□□□ -0.63
USP28-203ENST00000537490 CRAMP1Q96RY5 1269 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 PSMD1Q99460 953 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 TRIM35Q9UPQ4 493 aa11.09□□□□□ -0.63
USP28-203ENST00000537490 AIMP1Q12904 312 aaKnown RBP11.08□□□□□ -0.64
USP28-203ENST00000537490 COL13A1Q5TAT6 717 aaPredicted RBP11.08□□□□□ -0.64
USP28-203ENST00000537490 LDHDQ86WU2 507 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 XAGE3Q8WTP9 111 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 RUNDC1Q96C34 613 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 NLRP3Q96P20 1036 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 UTP14AQ9BVJ6 771 aaKnown RBP11.08□□□□□ -0.64
USP28-203ENST00000537490 HACL1Q9UJ83 578 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 ADAMTS8Q9UP79 889 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 LAS1LQ9Y4W2 734 aaKnown RBP11.08□□□□□ -0.64
USP28-203ENST00000537490 RIC1Q4ADV7 1423 aa11.08□□□□□ -0.64
USP28-203ENST00000537490 NUP98P52948 1817 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 PPEF1O14829 653 aaPredicted RBP11.07□□□□□ -0.64
USP28-203ENST00000537490 EPHX2P34913 555 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 MAPK8IP2Q13387 824 aaPredicted RBP11.07□□□□□ -0.64
USP28-203ENST00000537490 EAPPQ56P03 285 aaPredicted RBP11.07□□□□□ -0.64
USP28-203ENST00000537490 JDP2Q8WYK2 163 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 DDX21Q9NR30 783 aaKnown RBP eCLIP11.07□□□□□ -0.64
USP28-203ENST00000537490 CREBZFQ9NS37 354 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 RNF123Q5XPI4 1314 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 PASKQ96RG2 1323 aa11.07□□□□□ -0.64
USP28-203ENST00000537490 ITGBL1O95965 494 aaPredicted RBP11.06□□□□□ -0.64
USP28-203ENST00000537490 HSPA1AP0DMV8 641 aaKnown RBP11.06□□□□□ -0.64
USP28-203ENST00000537490 HSPA1BP0DMV9 641 aaKnown RBP11.06□□□□□ -0.64
USP28-203ENST00000537490 HCLS1P14317 486 aaPredicted RBP11.06□□□□□ -0.64
USP28-203ENST00000537490 TCIRG1Q13488 830 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 WDR43Q15061 677 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP28-203ENST00000537490 NLRP10Q86W26 655 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 GPC2Q8N158 579 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 LARGE2Q8N3Y3 721 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 ZNF428Q96B54 188 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 MKRN1Q9UHC7 482 aaKnown RBP11.06□□□□□ -0.64
USP28-203ENST00000537490 CLEC11AQ9Y240 323 aa11.06□□□□□ -0.64
USP28-203ENST00000537490 COL4A5P29400 1685 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 EIF6P56537 245 aaKnown RBP11.05□□□□□ -0.64
USP28-203ENST00000537490 GRIPAP1Q4V328 841 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 HSP90AB3PQ58FF7 597 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 CHPF2Q9P2E5 772 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 ATP6V0A2Q9Y487 856 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 GJA3Q9Y6H8 435 aa11.05□□□□□ -0.64
USP28-203ENST00000537490 MAP1SQ66K74 1059 aaPredicted RBP11.04□□□□□ -0.64
USP28-203ENST00000537490 PNMA8AQ86V59 439 aaPredicted RBP11.04□□□□□ -0.64
USP28-203ENST00000537490 CNTROBQ8N137 903 aa11.04□□□□□ -0.64
USP28-203ENST00000537490 PRKRIP1Q9H875 184 aaPredicted RBP11.04□□□□□ -0.64
USP28-203ENST00000537490 TRMT112Q9UI30 125 aaKnown RBP11.04□□□□□ -0.64
USP28-203ENST00000537490 ABCC4O15439 1325 aa11.04□□□□□ -0.64
USP28-203ENST00000537490 PPIP5K2O43314 1243 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 BBOX1O75936 387 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 EPS15P42566 896 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 SCNN1DP51172 638 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 AOC3Q16853 763 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 HDGFL1Q5TGJ6 251 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 DUSP27Q5VZP5 1158 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 CFAP44Q96MT7 982 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 SH3TC1Q8TE82 1336 aa11.03□□□□□ -0.64
USP28-203ENST00000537490 SCN4AP35499 1836 aa11.02□□□□□ -0.64
USP28-203ENST00000537490 TMEM88BA6NKF7 163 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 APAF1O14727 1248 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 HOXB7P09629 217 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 ANKRD13DQ6ZTN6 518 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 SP8Q8IXZ3 490 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 NIM1KQ8IY84 436 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 PLBD2Q8NHP8 589 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 ISCA1Q9BUE6 129 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 RTFDC1Q9BY42 306 aaPredicted RBP11.02□□□□□ -0.65
USP28-203ENST00000537490 TMX4Q9H1E5 349 aaPredicted RBP11.02□□□□□ -0.65
USP28-203ENST00000537490 MBIPQ9NS73 344 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 CNTNAP1P78357 1384 aa11.02□□□□□ -0.65
USP28-203ENST00000537490 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
USP28-203ENST00000537490 ZNF853P0CG23 659 aa11.01□□□□□ -0.65
USP28-203ENST00000537490 LMOD1P29536 600 aaPredicted RBP11.01□□□□□ -0.65
USP28-203ENST00000537490 VEGFBP49765 207 aa11.01□□□□□ -0.65
USP28-203ENST00000537490 FMR1Q06787 632 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP28-203ENST00000537490 GRAPQ13588 217 aa11.01□□□□□ -0.65
USP28-203ENST00000537490 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
USP28-203ENST00000537490 DDX46Q7L014 1031 aaKnown RBP11.01□□□□□ -0.65
USP28-203ENST00000537490 MPNDQ8N594 471 aa11.01□□□□□ -0.65
USP28-203ENST00000537490 GRAPLQ8TC17 118 aaPredicted RBP11.01□□□□□ -0.65
USP28-203ENST00000537490 VPS33BQ9H267 617 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms