RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	BRD2	P25440	801 aa	Known RBP	5.4	□□□□□ -1.54
CD44-238	ENST00000534296	ARID4A	P29374	1257 aa	Predicted RBP	5.4	□□□□□ -1.54
CD44-238	ENST00000534296	ZNF280C	Q8ND82	737 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	WHAMM	Q8TF30	809 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	C7orf43	Q8WVR3	580 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	EDARADD	Q8WWZ3	215 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	IFT43	Q96FT9	208 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	RRAGC	Q9HB90	399 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	KLK14	Q9P0G3	267 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	ADAMTS8	Q9UP79	889 aa		5.4	□□□□□ -1.54
CD44-238	ENST00000534296	IDH3A	P50213	366 aa		5.39	□□□□□ -1.55
CD44-238	ENST00000534296	BEND7	Q8N7W2	519 aa	Predicted RBP	5.39	□□□□□ -1.55
CD44-238	ENST00000534296	ABTB2	Q8N961	1025 aa		5.39	□□□□□ -1.55
CD44-238	ENST00000534296	C11orf16	Q9NQ32	467 aa		5.39	□□□□□ -1.55
CD44-238	ENST00000534296	C2CD2L	O14523	706 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	SIN3B	O75182	1162 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	MICAL2	O94851	1124 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	ARHGEF15	O94989	841 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	EPX	P11678	715 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	PCBP4	P57723	403 aa	Known RBP	5.38	□□□□□ -1.55
CD44-238	ENST00000534296	SFSWAP	Q12872	951 aa	Known RBP	5.38	□□□□□ -1.55
CD44-238	ENST00000534296	PCSK7	Q16549	785 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	SYT9	Q86SS6	491 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	BHMT	Q93088	406 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	STRN4	Q9NRL3	753 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	MKL2	Q9ULH7	1088 aa		5.38	□□□□□ -1.55
CD44-238	ENST00000534296	ELOA3C	A0A087WX78	387 aa	Predicted RBP	5.37	□□□□□ -1.55
CD44-238	ENST00000534296	ELOA3D	A6NLF2	546 aa	Predicted RBP	5.37	□□□□□ -1.55
CD44-238	ENST00000534296	CCIN	Q13939	588 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	NAA30	Q147X3	362 aa	Predicted RBP	5.37	□□□□□ -1.55
CD44-238	ENST00000534296	ELOA3B	Q3SY89	546 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	COX20	Q5RI15	118 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	KANK3	Q6NY19	840 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	TREML1	Q86YW5	311 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	ELOA3	Q8NG57	546 aa		5.37	□□□□□ -1.55
CD44-238	ENST00000534296	PCSK2	P16519	638 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	INPP5B	P32019	993 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	TBC1D8B	Q0IIM8	1120 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	TTC16	Q8NEE8	873 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	PIK3R5	Q8WYR1	880 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	UBE2O	Q9C0C9	1292 aa	Known RBP	5.36	□□□□□ -1.55
CD44-238	ENST00000534296	STIM2	Q9P246	746 aa		5.36	□□□□□ -1.55
CD44-238	ENST00000534296	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	5.36	□□□□□ -1.55
CD44-238	ENST00000534296	TMEM88B	A6NKF7	163 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	SPDYE3	A6NKU9	549 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	ADARB2-AS1	A8MUL3	147 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	SHISA8	B8ZZ34	492 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	CHSY3	Q70JA7	882 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	FCHSD1	Q86WN1	690 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	RGL4	Q8IZJ4	473 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	TNFRSF25	Q93038	417 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	SLC30A3	Q99726	388 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	NOP53	Q9NZM5	478 aa	Known RBP	5.35	□□□□□ -1.55
CD44-238	ENST00000534296	DMGDH	Q9UI17	866 aa	Known RBP	5.35	□□□□□ -1.55
CD44-238	ENST00000534296	LRFN2	Q9ULH4	789 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	BCS1L	Q9Y276	419 aa		5.35	□□□□□ -1.55
CD44-238	ENST00000534296	FNDC3A	Q9Y2H6	1198 aa	Known RBP	5.35	□□□□□ -1.55
CD44-238	ENST00000534296	GNB5	O14775	395 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	RPLP1	P05386	114 aa	Known RBP	5.34	□□□□□ -1.55
CD44-238	ENST00000534296	NFKB1	P19838	968 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	SSFA2	P28290	1259 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	ADH7	P40394	386 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	RAB44	Q7Z6P3	723 aa	Predicted RBP	5.34	□□□□□ -1.55
CD44-238	ENST00000534296	ALYREF	Q86V81	257 aa	Known RBP	5.34	□□□□□ -1.55
CD44-238	ENST00000534296	CMTR1	Q8N1G2	835 aa	Known RBP	5.34	□□□□□ -1.55
CD44-238	ENST00000534296	HELQ	Q8TDG4	1101 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	BTBD6	Q96KE9	485 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	IGFLR1	Q9H665	355 aa		5.34	□□□□□ -1.55
CD44-238	ENST00000534296	RTCB	Q9Y3I0	505 aa	Known RBP	5.34	□□□□□ -1.55
CD44-238	ENST00000534296	XYLB	O75191	536 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	RARA	P10276	462 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	IRS1	P35568	1242 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	ZAP70	P43403	619 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	KCNMA1	Q12791	1236 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	ALKBH2	Q6NS38	261 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	GSX2	Q9BZM3	304 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	SAP130	Q9H0E3	1048 aa		5.33	□□□□□ -1.56
CD44-238	ENST00000534296	MAP3K6	O95382	1288 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	PSAP	P07602	524 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	SF3B2	Q13435	895 aa	Known RBP	5.32	□□□□□ -1.56
CD44-238	ENST00000534296	AAMP	Q13685	434 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	C1orf229	Q6ZS94	237 aa	Predicted RBP	5.32	□□□□□ -1.56
CD44-238	ENST00000534296	KRT25	Q7Z3Z0	450 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	ETFBKMT	Q8IXQ9	262 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	RBSN	Q9H1K0	784 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	HCN2	Q9UL51	889 aa		5.32	□□□□□ -1.56
CD44-238	ENST00000534296	UBAP1L	F5GYI3	381 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	TNFRSF10B	O14763	440 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	FAM13A	O94988	1023 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	ABL1	P00519	1130 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	EGFR	P00533	1210 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	DGKG	P49619	791 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	RASSF7	Q02833	373 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	NOM1	Q5C9Z4	860 aa	Known RBP	5.31	□□□□□ -1.56
CD44-238	ENST00000534296	TMEM151A	Q8N4L1	468 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	RETREG2	Q8NC44	543 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	GTF3C2	Q8WUA4	911 aa	Predicted RBP	5.31	□□□□□ -1.56
CD44-238	ENST00000534296	SLAIN2	Q9P270	581 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	SEPT3	Q9UH03	358 aa		5.31	□□□□□ -1.56
CD44-238	ENST00000534296	KLF15	Q9UIH9	416 aa		5.31	□□□□□ -1.56

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