RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 DICER1Q9UPY3 1922 aaKnown RBP12.57□□□□□ -0.4
SSBP3-215ENST00000533946 LMNB1P20700 586 aa12.57□□□□□ -0.4
SSBP3-215ENST00000533946 RTL5Q5HYW3 569 aaPredicted RBP12.57□□□□□ -0.4
SSBP3-215ENST00000533946 NLRP10Q86W26 655 aa12.57□□□□□ -0.4
SSBP3-215ENST00000533946 WWC1Q8IX03 1113 aa12.57□□□□□ -0.4
SSBP3-215ENST00000533946 ZNF277Q9NRM2 450 aaPredicted RBP12.57□□□□□ -0.4
SSBP3-215ENST00000533946 ERBB4Q15303 1308 aa12.57□□□□□ -0.4
SSBP3-215ENST00000533946 NPR1P16066 1061 aa12.56□□□□□ -0.4
SSBP3-215ENST00000533946 CRY2Q49AN0 593 aa12.56□□□□□ -0.4
SSBP3-215ENST00000533946 G2E3Q7L622 706 aa12.56□□□□□ -0.4
SSBP3-215ENST00000533946 IFT57Q9NWB7 429 aa12.56□□□□□ -0.4
SSBP3-215ENST00000533946 DDX60Q8IY21 1712 aaKnown RBP12.56□□□□□ -0.4
SSBP3-215ENST00000533946 POTEIP0CG38 1075 aa12.55□□□□□ -0.4
SSBP3-215ENST00000533946 POTEJP0CG39 1038 aa12.55□□□□□ -0.4
SSBP3-215ENST00000533946 GTF2E1P29083 439 aaPredicted RBP12.55□□□□□ -0.4
SSBP3-215ENST00000533946 TCIRG1Q13488 830 aa12.55□□□□□ -0.4
SSBP3-215ENST00000533946 FAM9BQ8IZU0 186 aa12.55□□□□□ -0.4
SSBP3-215ENST00000533946 CNKSR1Q969H4 720 aa12.55□□□□□ -0.4
SSBP3-215ENST00000533946 RGL2O15211 777 aa12.54□□□□□ -0.4
SSBP3-215ENST00000533946 ANP32CO43423 234 aa12.54□□□□□ -0.4
SSBP3-215ENST00000533946 DDNO94850 711 aaPredicted RBP12.54□□□□□ -0.4
SSBP3-215ENST00000533946 FAM89AQ96GI7 184 aa12.54□□□□□ -0.4
SSBP3-215ENST00000533946 ISCA1Q9BUE6 129 aa12.54□□□□□ -0.4
SSBP3-215ENST00000533946 ZNF541Q9H0D2 1346 aa12.54□□□□□ -0.4
SSBP3-215ENST00000533946 GNAI1P63096 354 aa12.53□□□□□ -0.4
SSBP3-215ENST00000533946 SLC10A5Q5PT55 438 aa12.53□□□□□ -0.4
SSBP3-215ENST00000533946 ANKRD13DQ6ZTN6 518 aa12.53□□□□□ -0.4
SSBP3-215ENST00000533946 UTP14AQ9BVJ6 771 aaKnown RBP12.53□□□□□ -0.4
SSBP3-215ENST00000533946 TAOK3Q9H2K8 898 aa12.53□□□□□ -0.4
SSBP3-215ENST00000533946 GLTPD2A6NH11 291 aa12.52□□□□□ -0.41
SSBP3-215ENST00000533946 HOXA10P31260 410 aaPredicted RBP12.52□□□□□ -0.41
SSBP3-215ENST00000533946 PLBD2Q8NHP8 589 aa12.52□□□□□ -0.41
SSBP3-215ENST00000533946 NYXQ9GZU5 481 aa12.52□□□□□ -0.41
SSBP3-215ENST00000533946 DBF4Q9UBU7 674 aaPredicted RBP12.52□□□□□ -0.41
SSBP3-215ENST00000533946 TRMT112Q9UI30 125 aaKnown RBP12.52□□□□□ -0.41
SSBP3-215ENST00000533946 ABCC4O15439 1325 aa12.52□□□□□ -0.41
SSBP3-215ENST00000533946 IBTKQ9P2D0 1353 aaPredicted RBP12.51□□□□□ -0.41
SSBP3-215ENST00000533946 WTIPA6NIX2 430 aaPredicted RBP12.5□□□□□ -0.41
SSBP3-215ENST00000533946 TOMM70O94826 608 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 HOXB7P09629 217 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 FKBP4Q02790 459 aaKnown RBP eCLIP12.5□□□□□ -0.41
SSBP3-215ENST00000533946 CCDC93Q567U6 631 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 RPGRQ92834 1020 aaKnown RBP12.5□□□□□ -0.41
SSBP3-215ENST00000533946 MYD88Q99836 296 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 PDZRN3Q9UPQ7 1066 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 LTBP3Q9NS15 1303 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 FANCIQ9NVI1 1328 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 RIC1Q4ADV7 1423 aa12.5□□□□□ -0.41
SSBP3-215ENST00000533946 LTBP1Q14766 1721 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 WDR90Q96KV7 1748 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 HSPA6P17066 643 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 EXOSC9Q06265 439 aaKnown RBP12.49□□□□□ -0.41
SSBP3-215ENST00000533946 CCDC27Q2M243 656 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 PARP10Q53GL7 1025 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 PPP1R42Q7Z4L9 355 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 CELF1Q92879 486 aaKnown RBP12.49□□□□□ -0.41
SSBP3-215ENST00000533946 GPR101Q96P66 508 aaPredicted RBP12.49□□□□□ -0.41
SSBP3-215ENST00000533946 CCDC85AQ96PX6 553 aaPredicted RBP12.49□□□□□ -0.41
SSBP3-215ENST00000533946 HYPKQ9NX55 129 aa12.49□□□□□ -0.41
SSBP3-215ENST00000533946 PPEF1O14829 653 aaPredicted RBP12.48□□□□□ -0.41
SSBP3-215ENST00000533946 IGKV5-2P06315 115 aa12.48□□□□□ -0.41
SSBP3-215ENST00000533946 ALDH1B1P30837 517 aa12.48□□□□□ -0.41
SSBP3-215ENST00000533946 NLRP3Q96P20 1036 aa12.48□□□□□ -0.41
SSBP3-215ENST00000533946 CRAMP1Q96RY5 1269 aa12.48□□□□□ -0.41
SSBP3-215ENST00000533946 SEC31BQ9NQW1 1179 aa12.48□□□□□ -0.41
SSBP3-215ENST00000533946 DUOX1Q9NRD9 1551 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 KDM2BQ8NHM5 1336 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 SH3TC1Q8TE82 1336 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 IARSP41252 1262 aaKnown RBP12.47□□□□□ -0.41
SSBP3-215ENST00000533946 CWF19L2Q2TBE0 894 aaKnown RBP12.47□□□□□ -0.41
SSBP3-215ENST00000533946 TWISTNBQ3B726 338 aaPredicted RBP12.47□□□□□ -0.41
SSBP3-215ENST00000533946 RIC3Q7Z5B4 369 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 DNAJC5GQ8N7S2 189 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 RBM17Q96I25 401 aaKnown RBP12.47□□□□□ -0.41
SSBP3-215ENST00000533946 MAP3K2Q9Y2U5 619 aa12.47□□□□□ -0.41
SSBP3-215ENST00000533946 PI4KAP2A4QPH2 592 aa12.46□□□□□ -0.41
SSBP3-215ENST00000533946 VAMP4O75379 141 aa12.46□□□□□ -0.41
SSBP3-215ENST00000533946 FMR1Q06787 632 aaKnown RBP eCLIP12.46□□□□□ -0.41
SSBP3-215ENST00000533946 PI4KAP1Q8N8J0 262 aa12.46□□□□□ -0.41
SSBP3-215ENST00000533946 SHTN1A0MZ66 631 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 IRS4O14654 1257 aaPredicted RBP12.45□□□□□ -0.42
SSBP3-215ENST00000533946 SLC4A2P04920 1241 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 VEGFAP15692 232 aaPredicted RBP12.45□□□□□ -0.42
SSBP3-215ENST00000533946 AOC3Q16853 763 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 HSP90AB3PQ58FF7 597 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 RTKN2Q8IZC4 609 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 RBM46Q8TBY0 533 aaKnown RBP12.45□□□□□ -0.42
SSBP3-215ENST00000533946 KCNQ5Q9NR82 932 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 ATP6V0A2Q9Y487 856 aa12.45□□□□□ -0.42
SSBP3-215ENST00000533946 RNF123Q5XPI4 1314 aa12.44□□□□□ -0.42
SSBP3-215ENST00000533946 ZNF521Q96K83 1311 aa12.44□□□□□ -0.42
SSBP3-215ENST00000533946 F6X3S4 739 aa12.44□□□□□ -0.42
SSBP3-215ENST00000533946 FZD9O00144 591 aa12.44□□□□□ -0.42
SSBP3-215ENST00000533946 TRIM28Q13263 835 aaKnown RBP12.44□□□□□ -0.42
SSBP3-215ENST00000533946 CCDC30Q5VVM6 783 aa12.44□□□□□ -0.42
SSBP3-215ENST00000533946 METTL22Q9BUU2 404 aaPredicted RBP12.44□□□□□ -0.42
SSBP3-215ENST00000533946 IL16Q14005 1332 aa12.43□□□□□ -0.42
SSBP3-215ENST00000533946 ZC3H4Q9UPT8 1303 aaKnown RBP12.43□□□□□ -0.42
SSBP3-215ENST00000533946 GPSM2P81274 684 aa12.43□□□□□ -0.42
SSBP3-215ENST00000533946 CALD1Q05682 793 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms