RNA–Protein interactions for RNA: ENST00000533362.1

PUF60-222, Transcript of poly(U) binding splicing factor 60, human

TSL 5

Gene PUF60, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-222	ENST00000533362	KIAA1551	Q9HCM1	1747 aa		28.57	■■■□□ 2.16
PUF60-222	ENST00000533362	SH3TC1	Q8TE82	1336 aa		28.56	■■■□□ 2.16
PUF60-222	ENST00000533362	CWC25	Q9NXE8	425 aa	Predicted RBP	28.56	■■■□□ 2.16
PUF60-222	ENST00000533362	KIF16B	Q96L93	1317 aa		28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	HSP90B1	P14625	803 aa	Known RBP	28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	DPEP1	P16444	411 aa		28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	RARS	P54136	660 aa	Known RBP	28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	BRPF1	P55201	1214 aa	Predicted RBP	28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	C2CD5	Q86YS7	1000 aa		28.55	■■■□□ 2.16
PUF60-222	ENST00000533362	BCL2L13	Q9BXK5	485 aa		28.55	■■■□□ 2.16
PUF60-222	ENST00000533362		A0A0G2JLW4	131 aa		28.54	■■■□□ 2.16
PUF60-222	ENST00000533362	ERFE	Q4G0M1	354 aa		28.54	■■■□□ 2.16
PUF60-222	ENST00000533362	NUTM1	Q86Y26	1132 aa		28.54	■■■□□ 2.16
PUF60-222	ENST00000533362	CCDC24	Q8N4L8	307 aa		28.54	■■■□□ 2.16
PUF60-222	ENST00000533362	ANKRD31	Q8N7Z5	1873 aa		28.54	■■■□□ 2.16
PUF60-222	ENST00000533362	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.53	■■■□□ 2.16
PUF60-222	ENST00000533362	LINS1	Q8NG48	757 aa		28.53	■■■□□ 2.16
PUF60-222	ENST00000533362	PIM2	Q9P1W9	311 aa		28.53	■■■□□ 2.16
PUF60-222	ENST00000533362	ABCC12	Q96J65	1359 aa		28.52	■■■□□ 2.16
PUF60-222	ENST00000533362	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	28.51	■■■□□ 2.15
PUF60-222	ENST00000533362	DLEC1	Q9Y238	1755 aa		28.51	■■■□□ 2.15
PUF60-222	ENST00000533362	KLRG2	A4D1S0	409 aa	Predicted RBP	28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	CHRNA5	P30532	468 aa		28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	GPR162	Q16538	588 aa		28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	SLC10A5	Q5PT55	438 aa		28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	PELP1	Q8IZL8	1130 aa	Known RBP	28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	YTHDC1	Q96MU7	727 aa	Known RBP	28.5	■■■□□ 2.15
PUF60-222	ENST00000533362	NEURL1B	A8MQ27	555 aa		28.49	■■■□□ 2.15
PUF60-222	ENST00000533362	PCCA	P05165	728 aa	Predicted RBP	28.49	■■■□□ 2.15
PUF60-222	ENST00000533362	IGKV5-2	P06315	115 aa		28.49	■■■□□ 2.15
PUF60-222	ENST00000533362	MASTL	Q96GX5	879 aa		28.49	■■■□□ 2.15
PUF60-222	ENST00000533362	NLRP3	Q96P20	1036 aa		28.49	■■■□□ 2.15
PUF60-222	ENST00000533362		F6X3S4	739 aa		28.48	■■■□□ 2.15
PUF60-222	ENST00000533362	IPO8	O15397	1037 aa	Known RBP	28.48	■■■□□ 2.15
PUF60-222	ENST00000533362	DALRD3	Q5D0E6	543 aa	Known RBP	28.48	■■■□□ 2.15
PUF60-222	ENST00000533362	STYK1	Q6J9G0	422 aa		28.48	■■■□□ 2.15
PUF60-222	ENST00000533362	API5	Q9BZZ5	524 aa	Known RBP	28.48	■■■□□ 2.15
PUF60-222	ENST00000533362	SRGN	P10124	158 aa		28.47	■■■□□ 2.15
PUF60-222	ENST00000533362	NPR1	P16066	1061 aa		28.47	■■■□□ 2.15
PUF60-222	ENST00000533362	KCNA3	P22001	575 aa		28.47	■■■□□ 2.15
PUF60-222	ENST00000533362	BRCA1	P38398	1863 aa	Known RBP	28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	COL11A2	P13942	1736 aa	Predicted RBP	28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	GRIN3B	O60391	1043 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	ALDH1L1	O75891	902 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	CWF19L2	Q2TBE0	894 aa	Known RBP	28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	CRY2	Q49AN0	593 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	BEND3	Q5T5X7	828 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	SLC4A10	Q6U841	1118 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	ARHGAP45	Q92619	1136 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	CNKSR1	Q969H4	720 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	ZNF622	Q969S3	477 aa	Known RBP eCLIP	28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	FAM89A	Q96GI7	184 aa		28.46	■■■□□ 2.15
PUF60-222	ENST00000533362	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.45	■■■□□ 2.15
PUF60-222	ENST00000533362	TTLL6	Q8N841	843 aa		28.45	■■■□□ 2.14
PUF60-222	ENST00000533362	RPGR	Q92834	1020 aa	Known RBP	28.45	■■■□□ 2.14
PUF60-222	ENST00000533362	SRCIN1	Q9C0H9	1055 aa		28.45	■■■□□ 2.14
PUF60-222	ENST00000533362	NOB1	Q9ULX3	412 aa	Known RBP	28.45	■■■□□ 2.14
PUF60-222	ENST00000533362	IRS4	O14654	1257 aa	Predicted RBP	28.44	■■■□□ 2.14
PUF60-222	ENST00000533362	GCKR	Q14397	625 aa		28.44	■■■□□ 2.14
PUF60-222	ENST00000533362	BCS1L	Q9Y276	419 aa		28.44	■■■□□ 2.14
PUF60-222	ENST00000533362	LAMB2	P55268	1798 aa		28.44	■■■□□ 2.14
PUF60-222	ENST00000533362	CDHR2	Q9BYE9	1310 aa		28.43	■■■□□ 2.14
PUF60-222	ENST00000533362	HCLS1	P14317	486 aa	Predicted RBP	28.42	■■■□□ 2.14
PUF60-222	ENST00000533362	ALDH1B1	P30837	517 aa		28.42	■■■□□ 2.14
PUF60-222	ENST00000533362	RBM17	Q96I25	401 aa	Known RBP	28.42	■■■□□ 2.14
PUF60-222	ENST00000533362	RTL5	Q5HYW3	569 aa	Predicted RBP	28.4	■■■□□ 2.14
PUF60-222	ENST00000533362	WWC3	Q9ULE0	1092 aa		28.4	■■■□□ 2.14
PUF60-222	ENST00000533362	DDX60	Q8IY21	1712 aa	Known RBP	28.4	■■■□□ 2.14
PUF60-222	ENST00000533362	ARFGEF1	Q9Y6D6	1849 aa		28.39	■■■□□ 2.14
PUF60-222	ENST00000533362		H7C1W4	665 aa		28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	BCAR3	O75815	825 aa		28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	YBX3	P16989	372 aa	Known RBP eCLIP	28.39	■■■□□ 2.14	3e-12	■□□□□ 11.3
PUF60-222	ENST00000533362	HOXA10	P31260	410 aa	Predicted RBP	28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	CCT4	P50991	539 aa	Known RBP	28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	SYNE4	Q8N205	404 aa		28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	FRAT1	Q92837	279 aa	Predicted RBP	28.39	■■■□□ 2.14
PUF60-222	ENST00000533362	PDE8A	O60658	829 aa		28.38	■■■□□ 2.13
PUF60-222	ENST00000533362	UBE3B	Q7Z3V4	1068 aa		28.38	■■■□□ 2.13
PUF60-222	ENST00000533362	ZKSCAN2	Q63HK3	967 aa		28.37	■■■□□ 2.13
PUF60-222	ENST00000533362	CRAMP1	Q96RY5	1269 aa		28.37	■■■□□ 2.13
PUF60-222	ENST00000533362	C9orf78	Q9NZ63	289 aa	Predicted RBP	28.37	■■■□□ 2.13
PUF60-222	ENST00000533362	GRM8	O00222	908 aa		28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	SF3B3	Q15393	1217 aa	Known RBP	28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	SOGA3	Q5TF21	947 aa		28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	PRPF40B	Q6NWY9	871 aa	Known RBP	28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	ATF7IP	Q6VMQ6	1270 aa		28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	DDX46	Q7L014	1031 aa	Known RBP	28.36	■■■□□ 2.13
PUF60-222	ENST00000533362	C3orf67	Q6ZVT6	689 aa		28.35	■■■□□ 2.13
PUF60-222	ENST00000533362	RCAN3	Q9UKA8	241 aa		28.35	■■■□□ 2.13
PUF60-222	ENST00000533362	CCDC152	Q4G0S7	254 aa		28.34	■■■□□ 2.13
PUF60-222	ENST00000533362	PLA2G12B	Q9BX93	195 aa		28.33	■■■□□ 2.13
PUF60-222	ENST00000533362	ABCC4	O15439	1325 aa		28.33	■■■□□ 2.13
PUF60-222	ENST00000533362	CTSW	P56202	376 aa		28.32	■■■□□ 2.12
PUF60-222	ENST00000533362	JARID2	Q92833	1246 aa	Predicted RBP	28.32	■■■□□ 2.12
PUF60-222	ENST00000533362	TMX4	Q9H1E5	349 aa	Predicted RBP	28.32	■■■□□ 2.12
PUF60-222	ENST00000533362	TRIM27	P14373	513 aa		28.31	■■■□□ 2.12
PUF60-222	ENST00000533362	CASP7	P55210	303 aa		28.31	■■■□□ 2.12
PUF60-222	ENST00000533362	TMC4	Q7Z404	712 aa		28.3	■■■□□ 2.12
PUF60-222	ENST00000533362	GOLGB1	Q14789	3259 aa	Known RBP	28.3	■■■□□ 2.12
PUF60-222	ENST00000533362	MYH3	P11055	1940 aa		28.3	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms