RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 RSPH6AQ9H0K4 717 aa16.63■□□□□ 0.25
CAPN1-223ENST00000533079 PCDH10Q9P2E7 1040 aa16.63■□□□□ 0.25
CAPN1-223ENST00000533079 TLL2Q9Y6L7 1015 aa16.63■□□□□ 0.25
CAPN1-223ENST00000533079 ABCC12Q96J65 1359 aa16.63■□□□□ 0.25
CAPN1-223ENST00000533079 PRAMEF22A3QJZ6 481 aa16.62■□□□□ 0.25
CAPN1-223ENST00000533079 PRKAR2BP31323 418 aa16.62■□□□□ 0.25
CAPN1-223ENST00000533079 MAP2K2P36507 400 aa16.62■□□□□ 0.25
CAPN1-223ENST00000533079 PAXIP1Q6ZW49 1069 aaPredicted RBP16.62■□□□□ 0.25
CAPN1-223ENST00000533079 GJA3Q9Y6H8 435 aa16.62■□□□□ 0.25
CAPN1-223ENST00000533079 NBPF26B4DH59 902 aa16.61■□□□□ 0.25
CAPN1-223ENST00000533079 NBPF10Q6P3W6 841 aaKnown RBP16.61■□□□□ 0.25
CAPN1-223ENST00000533079 NBPF15Q8N660 670 aa16.61■□□□□ 0.25
CAPN1-223ENST00000533079 RPGRQ92834 1020 aaKnown RBP16.61■□□□□ 0.25
CAPN1-223ENST00000533079 HHIPL1Q96JK4 782 aa16.61■□□□□ 0.25
CAPN1-223ENST00000533079 CFAP53Q96M91 514 aa16.61■□□□□ 0.25
CAPN1-223ENST00000533079 VPS33BQ9H267 617 aa16.61■□□□□ 0.25
CAPN1-223ENST00000533079 CCDC85CA6NKD9 419 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 ERVV-1B6SEH8 477 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 HTATSF1O43719 755 aaKnown RBP16.6■□□□□ 0.25
CAPN1-223ENST00000533079 HOXA10P31260 410 aaPredicted RBP16.6■□□□□ 0.25
CAPN1-223ENST00000533079 CYP4F22Q6NT55 531 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 LARGE2Q8N3Y3 721 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 PHACTR3Q96KR7 559 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 CDHR2Q9BYE9 1310 aa16.6■□□□□ 0.25
CAPN1-223ENST00000533079 KDM3BQ7LBC6 1761 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 FAM177BA6PVY3 158 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 HLFQ16534 295 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 NIM1KQ8IY84 436 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 CCER1Q8TC90 406 aaPredicted RBP16.59■□□□□ 0.25
CAPN1-223ENST00000533079 ADARB2Q9NS39 739 aaKnown RBP16.59■□□□□ 0.25
CAPN1-223ENST00000533079 NUDCQ9Y266 331 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 NUP98P52948 1817 aa16.59■□□□□ 0.25
CAPN1-223ENST00000533079 EPS15P42566 896 aa16.58■□□□□ 0.24
CAPN1-223ENST00000533079 BRPF1P55201 1214 aaPredicted RBP16.58■□□□□ 0.24
CAPN1-223ENST00000533079 CST9Q5W186 159 aa16.58■□□□□ 0.24
CAPN1-223ENST00000533079 CRAMP1Q96RY5 1269 aa16.58■□□□□ 0.24
CAPN1-223ENST00000533079 MAP3K15Q6ZN16 1313 aa16.57■□□□□ 0.24
CAPN1-223ENST00000533079 PPEF1O14829 653 aaPredicted RBP16.57■□□□□ 0.24
CAPN1-223ENST00000533079 MCM10Q7L590 875 aa16.57■□□□□ 0.24
CAPN1-223ENST00000533079 RBM17Q96I25 401 aaKnown RBP16.57■□□□□ 0.24
CAPN1-223ENST00000533079 GRM1Q13255 1194 aa16.56■□□□□ 0.24
CAPN1-223ENST00000533079 KIF6Q6ZMV9 814 aa16.56■□□□□ 0.24
CAPN1-223ENST00000533079 SAPCD2Q86UD0 394 aa16.56■□□□□ 0.24
CAPN1-223ENST00000533079 NUTM1Q86Y26 1132 aa16.56■□□□□ 0.24
CAPN1-223ENST00000533079 TMX4Q9H1E5 349 aaPredicted RBP16.56■□□□□ 0.24
CAPN1-223ENST00000533079 GPRC5DQ9NZD1 345 aa16.56■□□□□ 0.24
CAPN1-223ENST00000533079 TRAF5O00463 557 aa16.55■□□□□ 0.24
CAPN1-223ENST00000533079 PPIP5K2O43314 1243 aa16.54■□□□□ 0.24
CAPN1-223ENST00000533079 FMR1Q06787 632 aaKnown RBP eCLIP16.54■□□□□ 0.248e-7■■□□□ 13.9
CAPN1-223ENST00000533079 TAF7Q15545 349 aaPredicted RBP16.54■□□□□ 0.24
CAPN1-223ENST00000533079 SUPT20HQ8NEM7 779 aa16.54■□□□□ 0.24
CAPN1-223ENST00000533079 PNISRQ8TF01 805 aaKnown RBP16.54■□□□□ 0.24
CAPN1-223ENST00000533079 UBN2Q6ZU65 1347 aa16.53■□□□□ 0.24
CAPN1-223ENST00000533079 ZC3H15Q8WU90 426 aaKnown RBP16.53■□□□□ 0.24
CAPN1-223ENST00000533079 MCOLN1Q9GZU1 580 aa16.53■□□□□ 0.24
CAPN1-223ENST00000533079 PGAP2Q9UHJ9 254 aa16.53■□□□□ 0.24
CAPN1-223ENST00000533079 ERBB4Q15303 1308 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 AOC2O75106 756 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 CELF2O95319 508 aaKnown RBP16.52■□□□□ 0.24
CAPN1-223ENST00000533079 NTSR2O95665 410 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 U2AF1L5P0DN76 240 aaPredicted RBP16.52■□□□□ 0.24
CAPN1-223ENST00000533079 U2AF1Q01081 240 aaKnown RBP eCLIP16.52■□□□□ 0.24
CAPN1-223ENST00000533079 AOC3Q16853 763 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 RTFDC1Q9BY42 306 aaPredicted RBP16.52■□□□□ 0.24
CAPN1-223ENST00000533079 ZNRF3Q9ULT6 936 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 ATP6V0A2Q9Y487 856 aa16.52■□□□□ 0.24
CAPN1-223ENST00000533079 TNRC18O15417 2968 aaPredicted RBP16.52■□□□□ 0.23
CAPN1-223ENST00000533079 NOGQ13253 232 aa16.51■□□□□ 0.23
CAPN1-223ENST00000533079 PARP10Q53GL7 1025 aa16.51■□□□□ 0.23
CAPN1-223ENST00000533079 PPP1R42Q7Z4L9 355 aa16.51■□□□□ 0.23
CAPN1-223ENST00000533079 TSKSQ9UJT2 592 aa16.51■□□□□ 0.23
CAPN1-223ENST00000533079 DCTN1Q14203 1278 aa16.5■□□□□ 0.23
CAPN1-223ENST00000533079 SUSD4Q5VX71 490 aa16.5■□□□□ 0.23
CAPN1-223ENST00000533079 ZNF34Q8IZ26 560 aa16.5■□□□□ 0.23
CAPN1-223ENST00000533079 ANKRD36CQ5JPF3 1778 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 GPTP24298 496 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 GMPSP49915 693 aaPredicted RBP16.49■□□□□ 0.23
CAPN1-223ENST00000533079 CXCL9Q07325 125 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 GIGYF2Q6Y7W6 1299 aaKnown RBP16.49■□□□□ 0.23
CAPN1-223ENST00000533079 CDC37L1Q7L3B6 337 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 CFAP44Q96MT7 982 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 NLRP3Q96P20 1036 aa16.49■□□□□ 0.23
CAPN1-223ENST00000533079 LRRC37AA6NMS7 1700 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 DGKZQ13574 1117 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 TNIP1Q15025 636 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 CIAPIN1Q6FI81 312 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 TTLL7Q6ZT98 887 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 GLIS2Q9BZE0 524 aaPredicted RBP16.48■□□□□ 0.23
CAPN1-223ENST00000533079 ZBTB3Q9H5J0 574 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 SAGE1Q9NXZ1 904 aa16.48■□□□□ 0.23
CAPN1-223ENST00000533079 ABCC4O15439 1325 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 DLG5Q8TDM6 1919 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 LAMB2P55268 1798 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 NEFMP07197 916 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 KIAA2012Q0VF49 1180 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 DPP8Q6V1X1 898 aaPredicted RBP16.47■□□□□ 0.23
CAPN1-223ENST00000533079 NGEFQ8N5V2 710 aa16.47■□□□□ 0.23
CAPN1-223ENST00000533079 DDX60Q8IY21 1712 aaKnown RBP16.46■□□□□ 0.23
CAPN1-223ENST00000533079 MYL6BP14649 208 aa16.46■□□□□ 0.23
CAPN1-223ENST00000533079 EIF4A1P60842 406 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms