RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 BCL2L13Q9BXK5 485 aa18.45■□□□□ 0.54
CPSF1-206ENST00000531480 COL11A2P13942 1736 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-206ENST00000531480 DDX60Q8IY21 1712 aaKnown RBP18.45■□□□□ 0.54
CPSF1-206ENST00000531480 TNRC6CQ9HCJ0 1690 aaKnown RBP18.44■□□□□ 0.54
CPSF1-206ENST00000531480 SLC10A5Q5PT55 438 aa18.44■□□□□ 0.54
CPSF1-206ENST00000531480 ARHGAP45Q92619 1136 aa18.44■□□□□ 0.54
CPSF1-206ENST00000531480 MYD88Q99836 296 aa18.44■□□□□ 0.54
CPSF1-206ENST00000531480 UTP14AQ9BVJ6 771 aaKnown RBP18.44■□□□□ 0.54
CPSF1-206ENST00000531480 ABCC12Q96J65 1359 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 ATP5J2-PTCD1G3V325 749 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 ST5P78524 1137 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 BEND3Q5T5X7 828 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 NLGN2Q8NFZ4 835 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 LINS1Q8NG48 757 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 PDZRN3Q9UPQ7 1066 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 KIF16BQ96L93 1317 aa18.43■□□□□ 0.54
CPSF1-206ENST00000531480 NEURL1BA8MQ27 555 aa18.42■□□□□ 0.54
CPSF1-206ENST00000531480 CENPBP07199 599 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-206ENST00000531480 KCNA3P22001 575 aa18.42■□□□□ 0.54
CPSF1-206ENST00000531480 NEXNQ0ZGT2 675 aa18.42■□□□□ 0.54
CPSF1-206ENST00000531480 F6X3S4 739 aa18.41■□□□□ 0.54
CPSF1-206ENST00000531480 BCAR3O75815 825 aa18.41■□□□□ 0.54
CPSF1-206ENST00000531480 ERFEQ4G0M1 354 aa18.41■□□□□ 0.54
CPSF1-206ENST00000531480 ZBTB38Q8NAP3 1195 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-206ENST00000531480 YTHDC1Q96MU7 727 aaKnown RBP18.41■□□□□ 0.54
CPSF1-206ENST00000531480 CWC25Q9NXE8 425 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-206ENST00000531480 NOB1Q9ULX3 412 aaKnown RBP18.41■□□□□ 0.54
CPSF1-206ENST00000531480 GOLGB1Q14789 3259 aaKnown RBP18.4■□□□□ 0.54
CPSF1-206ENST00000531480 PCCAP05165 728 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-206ENST00000531480 PDE6BP35913 854 aa18.4■□□□□ 0.54
CPSF1-206ENST00000531480 GPR162Q16538 588 aa18.4■□□□□ 0.54
CPSF1-206ENST00000531480 CWF19L2Q2TBE0 894 aaKnown RBP18.4■□□□□ 0.54
CPSF1-206ENST00000531480 CRY2Q49AN0 593 aa18.4■□□□□ 0.54
CPSF1-206ENST00000531480 NUTM1Q86Y26 1132 aa18.4■□□□□ 0.54
CPSF1-206ENST00000531480 TRMT112Q9UI30 125 aaKnown RBP18.4■□□□□ 0.54
CPSF1-206ENST00000531480 SH3TC1Q8TE82 1336 aa18.4■□□□□ 0.54
CPSF1-206ENST00000531480 FAM177BA6PVY3 158 aa18.39■□□□□ 0.53
CPSF1-206ENST00000531480 GCKRQ14397 625 aa18.39■□□□□ 0.53
CPSF1-206ENST00000531480 CDHR2Q9BYE9 1310 aa18.39■□□□□ 0.53
CPSF1-206ENST00000531480 ARFGEF1Q9Y6D6 1849 aa18.39■□□□□ 0.53
CPSF1-206ENST00000531480 H7C1W4 665 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 ALDH1L1O75891 902 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 DPEP1P16444 411 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 SYNE4Q8N205 404 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 CCDC24Q8N4L8 307 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 API5Q9BZZ5 524 aaKnown RBP18.38■□□□□ 0.53
CPSF1-206ENST00000531480 MYH3P11055 1940 aa18.38■□□□□ 0.53
CPSF1-206ENST00000531480 SRGNP10124 158 aa18.37■□□□□ 0.53
CPSF1-206ENST00000531480 CASP7P55210 303 aa18.37■□□□□ 0.53
CPSF1-206ENST00000531480 FAM89AQ96GI7 184 aa18.37■□□□□ 0.53
CPSF1-206ENST00000531480 ABCC4O15439 1325 aa18.37■□□□□ 0.53
CPSF1-206ENST00000531480 A0A0G2JLW4 131 aa18.36■□□□□ 0.53
CPSF1-206ENST00000531480 NPHP1O15259 732 aa18.36■□□□□ 0.53
CPSF1-206ENST00000531480 IPO8O15397 1037 aaKnown RBP18.36■□□□□ 0.53
CPSF1-206ENST00000531480 GTF2E1P29083 439 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-206ENST00000531480 CHRNA5P30532 468 aa18.36■□□□□ 0.53
CPSF1-206ENST00000531480 ATF7IPQ6VMQ6 1270 aa18.36■□□□□ 0.53
CPSF1-206ENST00000531480 SRCIN1Q9C0H9 1055 aa18.36■□□□□ 0.53
CPSF1-206ENST00000531480 UTYO14607 1347 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 H0YIN7 160 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 TRIM27P14373 513 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 HOXA10P31260 410 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-206ENST00000531480 STYK1Q6J9G0 422 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 C2CD5Q86YS7 1000 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 RCAN3Q9UKA8 241 aa18.35■□□□□ 0.53
CPSF1-206ENST00000531480 C3orf67Q6ZVT6 689 aa18.34■□□□□ 0.53
CPSF1-206ENST00000531480 MASTLQ96GX5 879 aa18.34■□□□□ 0.53
CPSF1-206ENST00000531480 NLRP3Q96P20 1036 aa18.34■□□□□ 0.53
CPSF1-206ENST00000531480 PLA2G12BQ9BX93 195 aa18.34■□□□□ 0.53
CPSF1-206ENST00000531480 WWC3Q9ULE0 1092 aa18.34■□□□□ 0.53
CPSF1-206ENST00000531480 IRS4O14654 1257 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-206ENST00000531480 HCLS1P14317 486 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-206ENST00000531480 HSP90B1P14625 803 aaKnown RBP18.33■□□□□ 0.52
CPSF1-206ENST00000531480 NPR1P16066 1061 aa18.33■□□□□ 0.52
CPSF1-206ENST00000531480 SF3B3Q15393 1217 aaKnown RBP18.33■□□□□ 0.52
CPSF1-206ENST00000531480 ZKSCAN2Q63HK3 967 aa18.33■□□□□ 0.52
CPSF1-206ENST00000531480 INTS3Q68E01 1043 aaKnown RBP18.33■□□□□ 0.52
CPSF1-206ENST00000531480 SLC4A10Q6U841 1118 aa18.33■□□□□ 0.52
CPSF1-206ENST00000531480 PIM2Q9P1W9 311 aa18.33■□□□□ 0.52
CPSF1-206ENST00000531480 SLX4Q8IY92 1834 aa18.33■□□□□ 0.52
CPSF1-206ENST00000531480 UTRNP46939 3433 aa18.32■□□□□ 0.52
CPSF1-206ENST00000531480 CCT4P50991 539 aaKnown RBP18.32■□□□□ 0.52
CPSF1-206ENST00000531480 CACNA1SQ13698 1873 aa18.32■□□□□ 0.52
CPSF1-206ENST00000531480 GRM8O00222 908 aa18.31■□□□□ 0.52
CPSF1-206ENST00000531480 PDE8AO60658 829 aa18.31■□□□□ 0.52
CPSF1-206ENST00000531480 YBX3P16989 372 aaKnown RBP eCLIP18.31■□□□□ 0.525e-7■■□□□ 11.8
CPSF1-206ENST00000531480 UBE3BQ7Z3V4 1068 aa18.31■□□□□ 0.52
CPSF1-206ENST00000531480 ZNF784Q8NCA9 323 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-206ENST00000531480 TTLL6Q8N841 843 aa18.3■□□□□ 0.52
CPSF1-206ENST00000531480 FRAT1Q92837 279 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-206ENST00000531480 CNKSR1Q969H4 720 aa18.3■□□□□ 0.52
CPSF1-206ENST00000531480 CRAMP1Q96RY5 1269 aa18.3■□□□□ 0.52
CPSF1-206ENST00000531480 USP44Q9H0E7 712 aa18.3■□□□□ 0.52
CPSF1-206ENST00000531480 RTL9Q8NET4 1388 aa18.3■□□□□ 0.52
CPSF1-206ENST00000531480 TAF1P21675 1872 aa18.29■□□□□ 0.52
CPSF1-206ENST00000531480 RTL5Q5HYW3 569 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-206ENST00000531480 TNNQ9UQP3 1299 aa18.29■□□□□ 0.52
CPSF1-206ENST00000531480 NBPF7P0C2Y1 421 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-206ENST00000531480 ALDH1B1P30837 517 aa18.28■□□□□ 0.52
CPSF1-206ENST00000531480 DALRD3Q5D0E6 543 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms