RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MAP1SQ66K74 1059 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-201ENST00000526271 RTKN2Q8IZC4 609 aa18.99■□□□□ 0.63
CPSF1-201ENST00000526271 PSMD1Q99460 953 aa18.99■□□□□ 0.63
CPSF1-201ENST00000526271 HACL1Q9UJ83 578 aa18.99■□□□□ 0.63
CPSF1-201ENST00000526271 RRP7AQ9Y3A4 280 aaKnown RBP18.99■□□□□ 0.63
CPSF1-201ENST00000526271 IBTKQ9P2D0 1353 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-201ENST00000526271 PROSER3Q2NL68 480 aa18.98■□□□□ 0.63
CPSF1-201ENST00000526271 EAPPQ56P03 285 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-201ENST00000526271 ZBTB3Q9H5J0 574 aa18.98■□□□□ 0.63
CPSF1-201ENST00000526271 THSD7BQ9C0I4 1608 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 ANKRD36CQ5JPF3 1778 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 MYL6BP14649 208 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 ALDH1B1P30837 517 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 NFE2L2Q16236 605 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 COL4A1P02462 1669 aa18.97■□□□□ 0.63
CPSF1-201ENST00000526271 ANXA1P04083 346 aa18.96■□□□□ 0.63
CPSF1-201ENST00000526271 SCNN1DP51172 638 aa18.96■□□□□ 0.63
CPSF1-201ENST00000526271 TMEM88BA6NKF7 163 aa18.95■□□□□ 0.62
CPSF1-201ENST00000526271 CNTROBQ8N137 903 aa18.95■□□□□ 0.62
CPSF1-201ENST00000526271 GPC2Q8N158 579 aa18.95■□□□□ 0.62
CPSF1-201ENST00000526271 EPS15P42566 896 aa18.94■□□□□ 0.62
CPSF1-201ENST00000526271 TRPM7Q96QT4 1865 aa18.94■□□□□ 0.62
CPSF1-201ENST00000526271 RASSF10A6NK89 507 aa18.93■□□□□ 0.62
CPSF1-201ENST00000526271 GIGYF2Q6Y7W6 1299 aaKnown RBP18.93■□□□□ 0.62
CPSF1-201ENST00000526271 PNISRQ8TF01 805 aaKnown RBP18.93■□□□□ 0.62
CPSF1-201ENST00000526271 CRAMP1Q96RY5 1269 aa18.93■□□□□ 0.62
CPSF1-201ENST00000526271 WBP1LQ9NX94 342 aa18.93■□□□□ 0.62
CPSF1-201ENST00000526271 GTF2E1P29083 439 aaPredicted RBP18.92■□□□□ 0.62
CPSF1-201ENST00000526271 NYXQ9GZU5 481 aa18.92■□□□□ 0.62
CPSF1-201ENST00000526271 DUOX1Q9NRD9 1551 aa18.92■□□□□ 0.62
CPSF1-201ENST00000526271 TCERG1O14776 1098 aaKnown RBP18.91■□□□□ 0.62
CPSF1-201ENST00000526271 CLEC11AQ9Y240 323 aa18.91■□□□□ 0.62
CPSF1-201ENST00000526271 GJA3Q9Y6H8 435 aa18.91■□□□□ 0.62
CPSF1-201ENST00000526271 DDX60Q8IY21 1712 aaKnown RBP18.91■□□□□ 0.62
CPSF1-201ENST00000526271 PPEF1O14829 653 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-201ENST00000526271 KRT24Q2M2I5 525 aa18.9■□□□□ 0.62
CPSF1-201ENST00000526271 SLC10A5Q5PT55 438 aa18.9■□□□□ 0.62
CPSF1-201ENST00000526271 KIF6Q6ZMV9 814 aa18.9■□□□□ 0.62
CPSF1-201ENST00000526271 PRDM10Q9NQV6 1147 aa18.9■□□□□ 0.62
CPSF1-201ENST00000526271 ERBB4Q15303 1308 aa18.9■□□□□ 0.62
CPSF1-201ENST00000526271 TRAF5O00463 557 aa18.89■□□□□ 0.61
CPSF1-201ENST00000526271 CST9Q5W186 159 aa18.89■□□□□ 0.61
CPSF1-201ENST00000526271 CC2D2BQ6DHV5 1058 aa18.89■□□□□ 0.61
CPSF1-201ENST00000526271 PNMA8AQ86V59 439 aaPredicted RBP18.89■□□□□ 0.61
CPSF1-201ENST00000526271 RPGRQ92834 1020 aaKnown RBP18.89■□□□□ 0.61
CPSF1-201ENST00000526271 DDX21Q9NR30 783 aaKnown RBP eCLIP18.89■□□□□ 0.61
CPSF1-201ENST00000526271 ABCC4O15439 1325 aa18.89■□□□□ 0.61
CPSF1-201ENST00000526271 LRRC37AA6NMS7 1700 aa18.88■□□□□ 0.61
CPSF1-201ENST00000526271 HSPA8P11142 646 aaKnown RBP18.88■□□□□ 0.61
CPSF1-201ENST00000526271 LBX1P52954 281 aa18.88■□□□□ 0.61
CPSF1-201ENST00000526271 AOC3Q16853 763 aa18.88■□□□□ 0.61
CPSF1-201ENST00000526271 LARGE2Q8N3Y3 721 aa18.87■□□□□ 0.61
CPSF1-201ENST00000526271 JDP2Q8WYK2 163 aa18.87■□□□□ 0.61
CPSF1-201ENST00000526271 ZNF428Q96B54 188 aa18.87■□□□□ 0.61
CPSF1-201ENST00000526271 RBM17Q96I25 401 aaKnown RBP18.87■□□□□ 0.61
CPSF1-201ENST00000526271 WDR33Q9C0J8 1336 aaKnown RBP18.87■□□□□ 0.61
CPSF1-201ENST00000526271 TSPYL4Q9UJ04 414 aa18.87■□□□□ 0.61
CPSF1-201ENST00000526271 ATP6V0A2Q9Y487 856 aa18.87■□□□□ 0.61
CPSF1-201ENST00000526271 EIF2S2P20042 333 aaKnown RBP18.86■□□□□ 0.61
CPSF1-201ENST00000526271 EIF6P56537 245 aaKnown RBP18.86■□□□□ 0.61
CPSF1-201ENST00000526271 CXCL9Q07325 125 aa18.86■□□□□ 0.61
CPSF1-201ENST00000526271 DEFB115Q30KQ5 88 aa18.86■□□□□ 0.61
CPSF1-201ENST00000526271 RTFDC1Q9BY42 306 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-201ENST00000526271 SHTN1A0MZ66 631 aa18.85■□□□□ 0.61
CPSF1-201ENST00000526271 HCLS1P14317 486 aaPredicted RBP18.85■□□□□ 0.61
CPSF1-201ENST00000526271 CTCFP49711 727 aaPredicted RBP18.85■□□□□ 0.61
CPSF1-201ENST00000526271 NLRP10Q86W26 655 aa18.85■□□□□ 0.61
CPSF1-201ENST00000526271 PPIP5K2O43314 1243 aa18.84■□□□□ 0.61
CPSF1-201ENST00000526271 TMPOP42166 694 aaKnown RBP18.84■□□□□ 0.61
CPSF1-201ENST00000526271 RIPK4P57078 832 aa18.84■□□□□ 0.61
CPSF1-201ENST00000526271 COPS6Q7L5N1 327 aa18.84■□□□□ 0.61
CPSF1-201ENST00000526271 NECTIN2Q92692 538 aa18.84■□□□□ 0.61
CPSF1-201ENST00000526271 GPRC5DQ9NZD1 345 aa18.84■□□□□ 0.61
CPSF1-201ENST00000526271 YDJCA8MPS7 323 aa18.83■□□□□ 0.6
CPSF1-201ENST00000526271 HIRAP54198 1017 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-201ENST00000526271 PARP10Q53GL7 1025 aa18.83■□□□□ 0.6
CPSF1-201ENST00000526271 XAGE3Q8WTP9 111 aa18.83■□□□□ 0.6
CPSF1-201ENST00000526271 UTP14AQ9BVJ6 771 aaKnown RBP18.83■□□□□ 0.6
CPSF1-201ENST00000526271 CYP4F22Q6NT55 531 aa18.82■□□□□ 0.6
CPSF1-201ENST00000526271 PPP1R42Q7Z4L9 355 aa18.82■□□□□ 0.6
CPSF1-201ENST00000526271 NIM1KQ8IY84 436 aa18.82■□□□□ 0.6
CPSF1-201ENST00000526271 NLRP3Q96P20 1036 aa18.82■□□□□ 0.6
CPSF1-201ENST00000526271 MAPK8IP3Q9UPT6 1336 aa18.81■□□□□ 0.6
CPSF1-201ENST00000526271 POLR2AP24928 1970 aaKnown RBP18.81■□□□□ 0.6
CPSF1-201ENST00000526271 GMPSP49915 693 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-201ENST00000526271 DLK2Q6UY11 383 aa18.81■□□□□ 0.6
CPSF1-201ENST00000526271 USP50Q70EL3 339 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-201ENST00000526271 CAPNS2Q96L46 248 aa18.81■□□□□ 0.6
CPSF1-201ENST00000526271 ABT1Q9ULW3 272 aaKnown RBP18.81■□□□□ 0.6
CPSF1-201ENST00000526271 TRIM35Q9UPQ4 493 aa18.81■□□□□ 0.6
CPSF1-201ENST00000526271 SCN9AQ15858 1988 aa18.81■□□□□ 0.6
CPSF1-201ENST00000526271 CHL1O00533 1208 aa18.8■□□□□ 0.6
CPSF1-201ENST00000526271 LMOD1P29536 600 aaPredicted RBP18.8■□□□□ 0.6
CPSF1-201ENST00000526271 AIMP1Q12904 312 aaKnown RBP18.8■□□□□ 0.6
CPSF1-201ENST00000526271 GRIPAP1Q4V328 841 aa18.8■□□□□ 0.6
CPSF1-201ENST00000526271 TRPM4Q8TD43 1214 aa18.8■□□□□ 0.6
CPSF1-201ENST00000526271 PGAP2Q9UHJ9 254 aa18.8■□□□□ 0.6
CPSF1-201ENST00000526271 AOC2O75106 756 aa18.79■□□□□ 0.6
CPSF1-201ENST00000526271 KIAA2012Q0VF49 1180 aa18.79■□□□□ 0.6
CPSF1-201ENST00000526271 TCIRG1Q13488 830 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms