RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 RIC1Q4ADV7 1423 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 PI4KAP2A4QPH2 592 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 ATP5J2-PTCD1G3V325 749 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 YBX3P16989 372 aaKnown RBP eCLIP6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 TRIM28Q13263 835 aaKnown RBP6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 SOGA3Q5TF21 947 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 PI4KAP1Q8N8J0 262 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 CCDC191Q8NCU4 936 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 CDCA7LQ96GN5 454 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 RBM17Q96I25 401 aaKnown RBP6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 NLRP3Q96P20 1036 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 SMC4Q9NTJ3 1288 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 CWC25Q9NXE8 425 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 KIF13BQ9NQT8 1826 aa6.87□□□□□ -1.31
HMGB1P40-201ENST00000525121 ABCC12Q96J65 1359 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 PTPRCP08575 1304 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 KIF16BQ96L93 1317 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 SRGNP10124 158 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ALDH1B1P30837 517 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ALDH1L2Q3SY69 923 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ARHGAP27Q6ZUM4 889 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ZBTB38Q8NAP3 1195 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 DNAAF4Q8WXU2 420 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ISCA1Q9BUE6 129 aa6.86□□□□□ -1.31
HMGB1P40-201ENST00000525121 ADCY9O60503 1353 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 IRS4O14654 1257 aaPredicted RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 HCLS1P14317 486 aaPredicted RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 KCNA3P22001 575 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 YY1P25490 414 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 RTL5Q5HYW3 569 aaPredicted RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 SLC10A5Q5PT55 438 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 PRPF40BQ6NWY9 871 aaKnown RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 SLC4A10Q6U841 1118 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 DDX46Q7L014 1031 aaKnown RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 G2E3Q7L622 706 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 TRMT2AQ8IZ69 625 aaKnown RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 LINS1Q8NG48 757 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 FAM89AQ96GI7 184 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 BCL2L13Q9BXK5 485 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 AFDNP55196 1824 aaKnown RBP6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 ANKRD36CQ5JPF3 1778 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 ARFGEF2Q9Y6D5 1785 aa6.85□□□□□ -1.31
HMGB1P40-201ENST00000525121 KLRG2A4D1S0 409 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 NEURL1BA8MQ27 555 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 IPO8O15397 1037 aaKnown RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 PCCAP05165 728 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 CRY2Q49AN0 593 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 CCDC152Q4G0S7 254 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 GRIPAP1Q4V328 841 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 CCDC93Q567U6 631 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 MRPL50Q8N5N7 158 aaKnown RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 SSH1Q8WYL5 1049 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 CRAMP1Q96RY5 1269 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 API5Q9BZZ5 524 aaKnown RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 SRCIN1Q9C0H9 1055 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 ZNF219Q9P2Y4 722 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 NUP98P52948 1817 aa6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 N4BP2Q86UW6 1770 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P40-201ENST00000525121 CDHR2Q9BYE9 1310 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 DLEC1Q9Y238 1755 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 F6X3S4 739 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 PPEF1O14829 653 aaPredicted RBP6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 C21orf2O43822 256 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 PDE8AO60658 829 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 ALDH1L1O75891 902 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 HOXA10P31260 410 aaPredicted RBP6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 GCKRQ14397 625 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 CWF19L2Q2TBE0 894 aaKnown RBP6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 CC2D2BQ6DHV5 1058 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 UBE3BQ7Z3V4 1068 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 TMC4Q7Z404 712 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 RTKN2Q8IZC4 609 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 C9orf78Q9NZ63 289 aaPredicted RBP6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 KIAA1551Q9HCM1 1747 aa6.83□□□□□ -1.32
HMGB1P40-201ENST00000525121 COL11A2P13942 1736 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 ANKRD31Q8N7Z5 1873 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 TNRC6CQ9HCJ0 1690 aaKnown RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 BBOX1O75936 387 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 IGKV5-2P06315 115 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 CCT4P50991 539 aaKnown RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 RARSP54136 660 aaKnown RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 CTSWP56202 376 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 GRAPQ13588 217 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 GRAPLQ8TC17 118 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 CDC5LQ99459 802 aaKnown RBP6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 TAOK3Q9H2K8 898 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 RNF181Q9P0P0 153 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 HDAC5Q9UQL6 1122 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 SRCAPQ6ZRS2 3230 aa6.82□□□□□ -1.32
HMGB1P40-201ENST00000525121 ABCC4O15439 1325 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 LTBP3Q9NS15 1303 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 GRM8O00222 908 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 LMNB1P20700 586 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 BRPF1P55201 1214 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 SF3B3Q15393 1217 aaKnown RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 BEND3Q5T5X7 828 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 C9orf131Q5VYM1 1079 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 C3orf67Q6ZVT6 689 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 SYNE4Q8N205 404 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 SUPT20HQ8NEM7 779 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms