RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ZC3H12AQ5D1E8 599 aaKnown RBP9.16□□□□□ -0.94
HDAC3-216ENST00000523088 MAF1Q9H063 256 aa9.16□□□□□ -0.94
HDAC3-216ENST00000523088 SMC4Q9NTJ3 1288 aa9.16□□□□□ -0.94
HDAC3-216ENST00000523088 PPP1R1BQ9UD71 204 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-216ENST00000523088 MEGF6O75095 1541 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 NCAPD2Q15021 1401 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 ESPNB1AK53 854 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 MPHOSPH10O00566 681 aaKnown RBP9.15□□□□□ -0.94
HDAC3-216ENST00000523088 CREB3O43889 395 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 SH3BP5O60239 455 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 IPO7O95373 1038 aaKnown RBP9.15□□□□□ -0.94
HDAC3-216ENST00000523088 APLP1P51693 650 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 SLC15A2Q16348 729 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 TBC1D10BQ4KMP7 808 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-216ENST00000523088 SWT1Q5T5J6 900 aaKnown RBP9.15□□□□□ -0.94
HDAC3-216ENST00000523088 IRF2BPLQ9H1B7 796 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 RANBP17Q9H2T7 1088 aaKnown RBP9.15□□□□□ -0.94
HDAC3-216ENST00000523088 COMMD10Q9Y6G5 202 aa9.15□□□□□ -0.94
HDAC3-216ENST00000523088 DDX54Q8TDD1 881 aaKnown RBP9.14□□□□□ -0.95
HDAC3-216ENST00000523088 EVI5LQ96CN4 794 aa9.14□□□□□ -0.95
HDAC3-216ENST00000523088 MTFR1LQ9H019 292 aa9.14□□□□□ -0.95
HDAC3-216ENST00000523088 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.14□□□□□ -0.95
HDAC3-216ENST00000523088 ITGB4P16144 1822 aa9.14□□□□□ -0.95
HDAC3-216ENST00000523088 RAD50Q92878 1312 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 CCDC66A2RUB6 948 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 TRIM6-TRIM34B2RNG4 842 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 PPP1R12AO14974 1030 aaPredicted RBP9.13□□□□□ -0.95
HDAC3-216ENST00000523088 ADRA2BP18089 450 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 NEXNQ0ZGT2 675 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 HSP90AB2PQ58FF8 381 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 C1QTNF12Q5T7M4 302 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 ATL2Q8NHH9 583 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 SLC16A10Q8TF71 515 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 ACSBG1Q96GR2 724 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 CARD14Q9BXL6 1004 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 TRIM34Q9BYJ4 488 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 MED4Q9NPJ6 270 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 CWC25Q9NXE8 425 aaPredicted RBP9.13□□□□□ -0.95
HDAC3-216ENST00000523088 SPG7Q9UQ90 795 aa9.13□□□□□ -0.95
HDAC3-216ENST00000523088 COL24A1Q17RW2 1714 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 UNCXA6NJT0 531 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 TULP2O00295 520 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 PRR29P0C7W0 189 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 HSPA5P11021 654 aaKnown RBP9.12□□□□□ -0.95
HDAC3-216ENST00000523088 KCNA1Q09470 495 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 AMOTL1Q8IY63 956 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 PROM2Q8N271 834 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 PROCA1Q8NCQ7 364 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-216ENST00000523088 KDM4CQ9H3R0 1056 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 C5P01031 1676 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 TAF1LQ8IZX4 1826 aa9.12□□□□□ -0.95
HDAC3-216ENST00000523088 TUBGCP6Q96RT7 1819 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 CBFA2T2O43439 604 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 KIF4AO95239 1232 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 KLHL10Q6JEL2 608 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 SMARCC1Q92922 1105 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-216ENST00000523088 SYTL4Q96C24 671 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-216ENST00000523088 DRC1Q96MC2 740 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 PAXBP1Q9Y5B6 917 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 MAP3K5Q99683 1374 aa9.11□□□□□ -0.95
HDAC3-216ENST00000523088 PRIM1P49642 420 aaKnown RBP9.1□□□□□ -0.95
HDAC3-216ENST00000523088 TRDNQ13061 729 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 C11orf91Q3C1V1 193 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 CT47A1Q5JQC4 288 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-216ENST00000523088 PTF1AQ7RTS3 328 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 CREBRFQ8IUR6 639 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 SENP7Q9BQF6 1050 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 NUCKS1Q9H1E3 243 aaKnown RBP9.1□□□□□ -0.95
HDAC3-216ENST00000523088 TMX4Q9H1E5 349 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-216ENST00000523088 PNMA2Q9UL42 364 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 EMILIN1Q9Y6C2 1016 aa9.1□□□□□ -0.95
HDAC3-216ENST00000523088 CHD4Q14839 1912 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 TOGARAM1Q9Y4F4 1720 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 STK10O94804 968 aaKnown RBP9.09□□□□□ -0.95
HDAC3-216ENST00000523088 HSP90AB1P08238 724 aaKnown RBP9.09□□□□□ -0.95
HDAC3-216ENST00000523088 JMYQ8N9B5 988 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 FLAD1Q8NFF5 587 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 ERCC4Q92889 916 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-216ENST00000523088 PANK3Q9H999 370 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 POLKQ9UBT6 870 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 CCNL1Q9UK58 526 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-216ENST00000523088 TPX2Q9ULW0 747 aaKnown RBP9.09□□□□□ -0.95
HDAC3-216ENST00000523088 ZNF831Q5JPB2 1677 aa9.09□□□□□ -0.95
HDAC3-216ENST00000523088 BICDL2A1A5D9 508 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 SMAPO00193 183 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 FBLN1P23142 703 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 TDO2P48775 406 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 NKX1-1Q15270 411 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-216ENST00000523088 USHBP1Q8N6Y0 703 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 PNISRQ8TF01 805 aaKnown RBP9.08□□□□□ -0.96
HDAC3-216ENST00000523088 AKT1S1Q96B36 256 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 GPBP1L1Q9HC44 474 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-216ENST00000523088 KIF3AQ9Y496 699 aa9.08□□□□□ -0.96
HDAC3-216ENST00000523088 IGSF1Q8N6C5 1336 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 PEX14O75381 377 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 ZBTB7AO95365 584 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 SETSIPP0DME0 302 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 HDLBPQ00341 1268 aaKnown RBP9.07□□□□□ -0.96
HDAC3-216ENST00000523088 KIAA2012Q0VF49 1180 aa9.07□□□□□ -0.96
HDAC3-216ENST00000523088 AMOTQ4VCS5 1084 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms