RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 COL11A2P13942 1736 aaPredicted RBP12.54□□□□□ -0.4
RNF4-221ENST00000513643 FAM177BA6PVY3 158 aa12.53□□□□□ -0.4
RNF4-221ENST00000513643 EXOSC9Q06265 439 aaKnown RBP12.53□□□□□ -0.4
RNF4-221ENST00000513643 DIEXFQ68CQ4 756 aaKnown RBP12.53□□□□□ -0.4
RNF4-221ENST00000513643 C3orf67Q6ZVT6 689 aa12.53□□□□□ -0.4
RNF4-221ENST00000513643 SNED1Q8TER0 1413 aa12.53□□□□□ -0.4
RNF4-221ENST00000513643 NFKBIEO00221 500 aa12.52□□□□□ -0.41
RNF4-221ENST00000513643 PRPF40BQ6NWY9 871 aaKnown RBP12.52□□□□□ -0.41
RNF4-221ENST00000513643 MIER1Q8N108 512 aa12.52□□□□□ -0.41
RNF4-221ENST00000513643 SYNE4Q8N205 404 aa12.52□□□□□ -0.41
RNF4-221ENST00000513643 ZNF622Q969S3 477 aaKnown RBP eCLIP12.52□□□□□ -0.41
RNF4-221ENST00000513643 MYH16Q9H6N6 1097 aa12.52□□□□□ -0.41
RNF4-221ENST00000513643 LTBP3Q9NS15 1303 aa12.52□□□□□ -0.41
RNF4-221ENST00000513643 SLFN5Q08AF3 891 aa12.51□□□□□ -0.41
RNF4-221ENST00000513643 KSR2Q6VAB6 950 aa12.51□□□□□ -0.41
RNF4-221ENST00000513643 G2E3Q7L622 706 aa12.51□□□□□ -0.41
RNF4-221ENST00000513643 CRAMP1Q96RY5 1269 aa12.51□□□□□ -0.41
RNF4-221ENST00000513643 METTL22Q9BUU2 404 aaPredicted RBP12.51□□□□□ -0.41
RNF4-221ENST00000513643 SLX4Q8IY92 1834 aa12.51□□□□□ -0.41
RNF4-221ENST00000513643 NPHP1O15259 732 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 C21orf2O43822 256 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 SLC4A2P04920 1241 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 GTF2E1P29083 439 aaPredicted RBP12.5□□□□□ -0.41
RNF4-221ENST00000513643 ALDH1B1P30837 517 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 C9orf131Q5VYM1 1079 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 SH3TC1Q8TE82 1336 aa12.5□□□□□ -0.41
RNF4-221ENST00000513643 TNRC6CQ9HCJ0 1690 aaKnown RBP12.5□□□□□ -0.41
RNF4-221ENST00000513643 PI4KAP2A4QPH2 592 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 E9PSI1 815 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 ATP5J2-PTCD1G3V325 749 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 IGKV5-2P06315 115 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 SF3B3Q15393 1217 aaKnown RBP12.49□□□□□ -0.41
RNF4-221ENST00000513643 RIC3Q7Z5B4 369 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 PI4KAP1Q8N8J0 262 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 CCDC191Q8NCU4 936 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 NLRP3Q96P20 1036 aa12.49□□□□□ -0.41
RNF4-221ENST00000513643 TRMT112Q9UI30 125 aaKnown RBP12.49□□□□□ -0.41
RNF4-221ENST00000513643 ANKRD36CQ5JPF3 1778 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 ZC3H4Q9UPT8 1303 aaKnown RBP12.48□□□□□ -0.41
RNF4-221ENST00000513643 TCERG1O14776 1098 aaKnown RBP12.48□□□□□ -0.41
RNF4-221ENST00000513643 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
RNF4-221ENST00000513643 LMNB1P20700 586 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 RASSF7Q02833 373 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 FLIIQ13045 1269 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 SOGA3Q5TF21 947 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 ZBTB38Q8NAP3 1195 aaPredicted RBP12.48□□□□□ -0.41
RNF4-221ENST00000513643 FAM89AQ96GI7 184 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 STK31Q9BXU1 1019 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 MAP3K2Q9Y2U5 619 aa12.48□□□□□ -0.41
RNF4-221ENST00000513643 SBF1O95248 1867 aa12.47□□□□□ -0.41
RNF4-221ENST00000513643 PCCAP05165 728 aaPredicted RBP12.47□□□□□ -0.41
RNF4-221ENST00000513643 HCLS1P14317 486 aaPredicted RBP12.47□□□□□ -0.41
RNF4-221ENST00000513643 CDCA7LQ96GN5 454 aa12.47□□□□□ -0.41
RNF4-221ENST00000513643 MYD88Q99836 296 aa12.47□□□□□ -0.41
RNF4-221ENST00000513643 ARFGEF2Q9Y6D5 1785 aa12.47□□□□□ -0.41
RNF4-221ENST00000513643 FER1L6Q2WGJ9 1857 aa12.46□□□□□ -0.41
RNF4-221ENST00000513643 CC2D2BQ6DHV5 1058 aa12.46□□□□□ -0.41
RNF4-221ENST00000513643 OLFM4Q6UX06 510 aa12.46□□□□□ -0.41
RNF4-221ENST00000513643 RBM17Q96I25 401 aaKnown RBP12.46□□□□□ -0.41
RNF4-221ENST00000513643 ABCC4O15439 1325 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 NEURL1BA8MQ27 555 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 H7C1W4 665 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 BBOX1O75936 387 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 CCDC93Q567U6 631 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 RTKN2Q8IZC4 609 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 RPGRQ92834 1020 aaKnown RBP12.45□□□□□ -0.42
RNF4-221ENST00000513643 ZNF428Q96B54 188 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 PSMD1Q99460 953 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 TAOK3Q9H2K8 898 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 CWC25Q9NXE8 425 aaPredicted RBP12.45□□□□□ -0.42
RNF4-221ENST00000513643 RNF181Q9P0P0 153 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 CACNA1FO60840 1977 aa12.45□□□□□ -0.42
RNF4-221ENST00000513643 CDHR2Q9BYE9 1310 aa12.44□□□□□ -0.42
RNF4-221ENST00000513643 IRS4O14654 1257 aaPredicted RBP12.44□□□□□ -0.42
RNF4-221ENST00000513643 KIF3CO14782 793 aa12.44□□□□□ -0.42
RNF4-221ENST00000513643 CASP7P55210 303 aa12.44□□□□□ -0.42
RNF4-221ENST00000513643 FKBP4Q02790 459 aaKnown RBP eCLIP12.44□□□□□ -0.42
RNF4-221ENST00000513643 SLC51AQ86UW1 340 aa12.44□□□□□ -0.42
RNF4-221ENST00000513643 ATP6V0A2Q9Y487 856 aa12.44□□□□□ -0.42
RNF4-221ENST00000513643 GRAPQ13588 217 aa12.43□□□□□ -0.42
RNF4-221ENST00000513643 BEND3Q5T5X7 828 aa12.43□□□□□ -0.42
RNF4-221ENST00000513643 SP8Q8IXZ3 490 aa12.43□□□□□ -0.42
RNF4-221ENST00000513643 MRPL50Q8N5N7 158 aaKnown RBP12.43□□□□□ -0.42
RNF4-221ENST00000513643 LINS1Q8NG48 757 aa12.43□□□□□ -0.42
RNF4-221ENST00000513643 GRAPLQ8TC17 118 aaPredicted RBP12.43□□□□□ -0.42
RNF4-221ENST00000513643 DNAAF4Q8WXU2 420 aa12.43□□□□□ -0.42
RNF4-221ENST00000513643 RTFDC1Q9BY42 306 aaPredicted RBP12.43□□□□□ -0.42
RNF4-221ENST00000513643 ZNF219Q9P2Y4 722 aaPredicted RBP12.43□□□□□ -0.42
RNF4-221ENST00000513643 CEP350Q5VT06 3117 aa12.42□□□□□ -0.42
RNF4-221ENST00000513643 GLTPD2A6NH11 291 aa12.42□□□□□ -0.42
RNF4-221ENST00000513643 PPEF1O14829 653 aaPredicted RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 CT47B1P0C2W7 299 aaPredicted RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 BRPF1P55201 1214 aaPredicted RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 GCKRQ14397 625 aa12.42□□□□□ -0.42
RNF4-221ENST00000513643 CWF19L2Q2TBE0 894 aaKnown RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 PLA2G12BQ9BX93 195 aa12.42□□□□□ -0.42
RNF4-221ENST00000513643 GPBP1L1Q9HC44 474 aaPredicted RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 DDX60Q8IY21 1712 aaKnown RBP12.42□□□□□ -0.42
RNF4-221ENST00000513643 PDE8AO60658 829 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms