RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 ZDHHC1Q8WTX9 485 aa6.96□□□□□ -1.3
PDLIM5-218ENST00000513341 EFCC1Q9HA90 598 aa6.96□□□□□ -1.3
PDLIM5-218ENST00000513341 YBX3P16989 372 aaKnown RBP eCLIP6.95□□□□□ -1.36e-8■□□□□ 8.3
PDLIM5-218ENST00000513341 LRRC69Q6ZNQ3 347 aa6.95□□□□□ -1.3
PDLIM5-218ENST00000513341 PLPP7Q8NBV4 271 aa6.95□□□□□ -1.3
PDLIM5-218ENST00000513341 L3MBTL2Q969R5 705 aa6.95□□□□□ -1.3
PDLIM5-218ENST00000513341 SNRKQ9NRH2 765 aa6.95□□□□□ -1.3
PDLIM5-218ENST00000513341 PCDHGA11Q9Y5H2 935 aa6.95□□□□□ -1.3
PDLIM5-218ENST00000513341 TARBP1Q13395 1621 aaKnown RBP6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 NOS2P35228 1153 aa6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 FMR1NBQ8N0W7 255 aaPredicted RBP6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 CHMP7Q8WUX9 453 aaPredicted RBP6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 NEUROD4Q9HD90 331 aa6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 PRM3Q9NNZ6 103 aa6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 TOP2AP11388 1531 aaKnown RBP6.94□□□□□ -1.3
PDLIM5-218ENST00000513341 IRF5Q13568 498 aa6.93□□□□□ -1.3
PDLIM5-218ENST00000513341 DTWD1Q8N5C7 304 aa6.93□□□□□ -1.3
PDLIM5-218ENST00000513341 PARP3Q9Y6F1 533 aa6.93□□□□□ -1.3
PDLIM5-218ENST00000513341 CLASP1Q7Z460 1538 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 SYNJ1O43426 1573 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 DNMBPQ6XZF7 1577 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 EPHA4P54764 986 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 C1orf53Q5VUE5 145 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 SHISA2Q6UWI4 295 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 ANKIB1Q9P2G1 1089 aa6.92□□□□□ -1.3
PDLIM5-218ENST00000513341 LZTS3O60299 673 aaPredicted RBP6.91□□□□□ -1.3
PDLIM5-218ENST00000513341 POTEAQ6S8J7 498 aa6.91□□□□□ -1.3
PDLIM5-218ENST00000513341 KCNH4Q9UQ05 1017 aa6.91□□□□□ -1.3
PDLIM5-218ENST00000513341 WDR97A6NE52 1622 aa6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 SOX11P35716 441 aa6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 AFF1P51825 1210 aaKnown RBP6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 HIRAP54198 1017 aaPredicted RBP6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 BRD7Q9NPI1 651 aa6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 USP21Q9UK80 565 aa6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 TBC1D2BQ9UPU7 963 aa6.9□□□□□ -1.3
PDLIM5-218ENST00000513341 GAPVD1Q14C86 1478 aa6.9□□□□□ -1.31
PDLIM5-218ENST00000513341 JPH1Q9HDC5 661 aaPredicted RBP6.89□□□□□ -1.31
PDLIM5-218ENST00000513341 SLC6A14Q9UN76 642 aa6.89□□□□□ -1.31
PDLIM5-218ENST00000513341 MAGI1Q96QZ7 1491 aaPredicted RBP6.89□□□□□ -1.31
PDLIM5-218ENST00000513341 POLA1P09884 1462 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 SOGA1O94964 1423 aa6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 TDRD9Q8NDG6 1382 aaKnown RBP6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 SERTM1A2A2V5 107 aa6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 RHPN1Q8TCX5 695 aa6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 WFDC12Q8WWY7 111 aa6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 ZNF358Q9NW07 568 aa6.88□□□□□ -1.31
PDLIM5-218ENST00000513341 CCDC88BA6NC98 1476 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 TYRO3Q06418 890 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 WASHC4Q2M389 1173 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 PRR23CQ6ZRP0 262 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 FBXO11Q86XK2 927 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 CEP63Q96MT8 703 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 PCMTD2Q9NV79 361 aa6.87□□□□□ -1.31
PDLIM5-218ENST00000513341 SYNJ2O15056 1496 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 EML3Q32P44 896 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 RAB44Q7Z6P3 723 aaPredicted RBP6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 SLC9A9Q8IVB4 645 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 IL27Q8NEV9 243 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 ZNF232Q9UNY5 417 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 NOD1Q9Y239 953 aa6.86□□□□□ -1.31
PDLIM5-218ENST00000513341 GRIN2BQ13224 1484 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 SNAPC4Q5SXM2 1469 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 NOS3P29474 1203 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 CD97P48960 835 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 IGF2-ASQ6U949 168 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 DMRTC2Q8IXT2 367 aaPredicted RBP6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 BHMTQ93088 406 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 UBE2OQ9C0C9 1292 aaKnown RBP6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 RAD54L2Q9Y4B4 1467 aa6.85□□□□□ -1.31
PDLIM5-218ENST00000513341 GTF2IP78347 998 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 VAC14Q08AM6 782 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 PCSK7Q16549 785 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 MSL1Q68DK7 614 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 PSAPL1Q6NUJ1 521 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 NFATC2IPQ8NCF5 419 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 FRRS1LQ9P0K9 344 aa6.84□□□□□ -1.31
PDLIM5-218ENST00000513341 SFI1A8K8P3 1242 aa6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 RGS9O75916 674 aaPredicted RBP6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 IREB2P48200 963 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 IRAK1P51617 712 aa6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 PSMA6P60900 246 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 SEMA3FQ13275 785 aa6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 DZIP1LQ8IYY4 767 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 NUDT8Q8WV74 236 aa6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 TTC9Q92623 222 aa6.83□□□□□ -1.32
PDLIM5-218ENST00000513341 KIAA1324LA8MWY0 1029 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 FSTP19883 344 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 HIF1AQ16665 826 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 MEGF10Q96KG7 1140 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 SUSD3Q96L08 255 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 DNAJB12Q9NXW2 375 aaKnown RBP6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 NAGPAQ9UK23 515 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 KIF13AQ9H1H9 1805 aa6.82□□□□□ -1.32
PDLIM5-218ENST00000513341 GRIK5Q16478 980 aa6.81□□□□□ -1.32
PDLIM5-218ENST00000513341 SH3PXD2AQ5TCZ1 1133 aa6.81□□□□□ -1.32
PDLIM5-218ENST00000513341 HSH2DQ96JZ2 352 aa6.81□□□□□ -1.32
PDLIM5-218ENST00000513341 FZD5Q13467 585 aa6.8□□□□□ -1.32
PDLIM5-218ENST00000513341 TNS4Q8IZW8 715 aa6.8□□□□□ -1.32
PDLIM5-218ENST00000513341 TMEM130Q8N3G9 435 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms