RNA–Protein interactions for RNA: ENST00000508290.5

SFXN1-209, Transcript of sideroflexin 1, humanhuman

TSL 4

Gene SFXN1, Length 592 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-209ENST00000508290 LMNB1P20700 586 aa25.58■■□□□ 1.69
SFXN1-209ENST00000508290 TRIM28Q13263 835 aaKnown RBP25.58■■□□□ 1.69
SFXN1-209ENST00000508290 C9orf131Q5VYM1 1079 aa25.58■■□□□ 1.69
SFXN1-209ENST00000508290 NLRP3Q96P20 1036 aa25.58■■□□□ 1.69
SFXN1-209ENST00000508290 GPBP1L1Q9HC44 474 aaPredicted RBP25.58■■□□□ 1.69
SFXN1-209ENST00000508290 SALL2Q9Y467 1007 aaPredicted RBP25.58■■□□□ 1.69
SFXN1-209ENST00000508290 LTBP3Q9NS15 1303 aa25.58■■□□□ 1.69
SFXN1-209ENST00000508290 ARFGEF2Q9Y6D5 1785 aa25.57■■□□□ 1.68
SFXN1-209ENST00000508290 C21orf2O43822 256 aa25.57■■□□□ 1.68
SFXN1-209ENST00000508290 HOXA10P31260 410 aaPredicted RBP25.57■■□□□ 1.68
SFXN1-209ENST00000508290 RIC3Q7Z5B4 369 aa25.57■■□□□ 1.68
SFXN1-209ENST00000508290 TSPYL6Q8N831 410 aa25.57■■□□□ 1.68
SFXN1-209ENST00000508290 RPGRQ92834 1020 aaKnown RBP25.57■■□□□ 1.68
SFXN1-209ENST00000508290 SH3TC1Q8TE82 1336 aa25.57■■□□□ 1.68
SFXN1-209ENST00000508290 ISCA1Q9BUE6 129 aa25.56■■□□□ 1.68
SFXN1-209ENST00000508290 RNF181Q9P0P0 153 aa25.56■■□□□ 1.68
SFXN1-209ENST00000508290 GRIPAP1Q4V328 841 aa25.55■■□□□ 1.68
SFXN1-209ENST00000508290 TRMT112Q9UI30 125 aaKnown RBP25.55■■□□□ 1.68
SFXN1-209ENST00000508290 SENP3-EIF4A1A0A087X0R7 540 aa25.54■■□□□ 1.68
SFXN1-209ENST00000508290 HSP90B1P14625 803 aaKnown RBP25.54■■□□□ 1.68
SFXN1-209ENST00000508290 CCDC93Q567U6 631 aa25.54■■□□□ 1.68
SFXN1-209ENST00000508290 CC2D2BQ6DHV5 1058 aa25.54■■□□□ 1.68
SFXN1-209ENST00000508290 RBM17Q96I25 401 aaKnown RBP25.54■■□□□ 1.68
SFXN1-209ENST00000508290 CRAMP1Q96RY5 1269 aa25.54■■□□□ 1.68
SFXN1-209ENST00000508290 PHAXQ9H814 394 aaKnown RBP25.54■■□□□ 1.68
SFXN1-209ENST00000508290 NFKBIEO00221 500 aa25.53■■□□□ 1.68
SFXN1-209ENST00000508290 C7orf43Q8WVR3 580 aa25.53■■□□□ 1.68
SFXN1-209ENST00000508290 TAOK3Q9H2K8 898 aa25.53■■□□□ 1.68
SFXN1-209ENST00000508290 ZNF521Q96K83 1311 aa25.53■■□□□ 1.68
SFXN1-209ENST00000508290 TNRC6CQ9HCJ0 1690 aaKnown RBP25.52■■□□□ 1.68
SFXN1-209ENST00000508290 RTKN2Q8IZC4 609 aa25.52■■□□□ 1.68
SFXN1-209ENST00000508290 RASSF7Q02833 373 aa25.5■■□□□ 1.67
SFXN1-209ENST00000508290 CCDC191Q8NCU4 936 aa25.5■■□□□ 1.67
SFXN1-209ENST00000508290 KDM2BQ8NHM5 1336 aa25.5■■□□□ 1.67
SFXN1-209ENST00000508290 SLC4A2P04920 1241 aa25.49■■□□□ 1.67
SFXN1-209ENST00000508290 KSR2Q6VAB6 950 aa25.49■■□□□ 1.67
SFXN1-209ENST00000508290 ZNF219Q9P2Y4 722 aaPredicted RBP25.49■■□□□ 1.67
SFXN1-209ENST00000508290 SLX4Q8IY92 1834 aa25.49■■□□□ 1.67
SFXN1-209ENST00000508290 VAMP4O75379 141 aa25.48■■□□□ 1.67
SFXN1-209ENST00000508290 EXOSC9Q06265 439 aaKnown RBP25.48■■□□□ 1.67
SFXN1-209ENST00000508290 METTL22Q9BUU2 404 aaPredicted RBP25.48■■□□□ 1.67
SFXN1-209ENST00000508290 TMX4Q9H1E5 349 aaPredicted RBP25.48■■□□□ 1.67
SFXN1-209ENST00000508290 ATP5J2-PTCD1G3V325 749 aa25.47■■□□□ 1.67
SFXN1-209ENST00000508290 NEXNQ0ZGT2 675 aa25.47■■□□□ 1.67
SFXN1-209ENST00000508290 E9PSI1 815 aa25.46■■□□□ 1.67
SFXN1-209ENST00000508290 FKBP4Q02790 459 aaKnown RBP eCLIP25.46■■□□□ 1.67
SFXN1-209ENST00000508290 DIEXFQ68CQ4 756 aaKnown RBP25.46■■□□□ 1.67
SFXN1-209ENST00000508290 ZBTB38Q8NAP3 1195 aaPredicted RBP25.46■■□□□ 1.67
SFXN1-209ENST00000508290 ZNF526Q8TF50 670 aaPredicted RBP25.46■■□□□ 1.67
SFXN1-209ENST00000508290 FER1L6Q2WGJ9 1857 aa25.46■■□□□ 1.67
SFXN1-209ENST00000508290 TMC4Q7Z404 712 aa25.45■■□□□ 1.66
SFXN1-209ENST00000508290 MYD88Q99836 296 aa25.45■■□□□ 1.66
SFXN1-209ENST00000508290 SPINK5Q9NQ38 1064 aaPredicted RBP25.45■■□□□ 1.66
SFXN1-209ENST00000508290 CWC25Q9NXE8 425 aaPredicted RBP25.45■■□□□ 1.66
SFXN1-209ENST00000508290 MAP3K2Q9Y2U5 619 aa25.45■■□□□ 1.66
SFXN1-209ENST00000508290 SBF1O95248 1867 aa25.45■■□□□ 1.66
SFXN1-209ENST00000508290 PI4KAP2A4QPH2 592 aa25.44■■□□□ 1.66
SFXN1-209ENST00000508290 BBOX1O75936 387 aa25.44■■□□□ 1.66
SFXN1-209ENST00000508290 HCLS1P14317 486 aaPredicted RBP25.44■■□□□ 1.66
SFXN1-209ENST00000508290 DDX46Q7L014 1031 aaKnown RBP25.44■■□□□ 1.66
SFXN1-209ENST00000508290 PI4KAP1Q8N8J0 262 aa25.44■■□□□ 1.66
SFXN1-209ENST00000508290 PSMD1Q99460 953 aa25.44■■□□□ 1.66
SFXN1-209ENST00000508290 PPEF1O14829 653 aaPredicted RBP25.43■■□□□ 1.66
SFXN1-209ENST00000508290 FLIIQ13045 1269 aa25.43■■□□□ 1.66
SFXN1-209ENST00000508290 C3orf67Q6ZVT6 689 aa25.43■■□□□ 1.66
SFXN1-209ENST00000508290 FAM89AQ96GI7 184 aa25.43■■□□□ 1.66
SFXN1-209ENST00000508290 PCCAP05165 728 aaPredicted RBP25.42■■□□□ 1.66
SFXN1-209ENST00000508290 C1QTNF8P60827 252 aa25.42■■□□□ 1.66
SFXN1-209ENST00000508290 SF3B3Q15393 1217 aaKnown RBP25.42■■□□□ 1.66
SFXN1-209ENST00000508290 CACNA1SQ13698 1873 aa25.41■■□□□ 1.66
SFXN1-209ENST00000508290 IRS4O14654 1257 aaPredicted RBP25.41■■□□□ 1.66
SFXN1-209ENST00000508290 PRELPP51888 382 aa25.41■■□□□ 1.66
SFXN1-209ENST00000508290 DPY19L2Q6NUT2 758 aa25.41■■□□□ 1.66
SFXN1-209ENST00000508290 ZNF428Q96B54 188 aa25.41■■□□□ 1.66
SFXN1-209ENST00000508290 ABCC4O15439 1325 aa25.4■■□□□ 1.66
SFXN1-209ENST00000508290 FKBP5Q13451 457 aaPredicted RBP25.4■■□□□ 1.66
SFXN1-209ENST00000508290 GRAPQ13588 217 aa25.4■■□□□ 1.66
SFXN1-209ENST00000508290 GRAPLQ8TC17 118 aaPredicted RBP25.4■■□□□ 1.66
SFXN1-209ENST00000508290 ATP6V0A2Q9Y487 856 aa25.4■■□□□ 1.66
SFXN1-209ENST00000508290 SNED1Q8TER0 1413 aa25.39■■□□□ 1.66
SFXN1-209ENST00000508290 CACNA1FO60840 1977 aa25.39■■□□□ 1.66
SFXN1-209ENST00000508290 GLTPD2A6NH11 291 aa25.39■■□□□ 1.66
SFXN1-209ENST00000508290 TCERG1O14776 1098 aaKnown RBP25.39■■□□□ 1.66
SFXN1-209ENST00000508290 SYNE4Q8N205 404 aa25.39■■□□□ 1.66
SFXN1-209ENST00000508290 VPS33BQ9H267 617 aa25.38■■□□□ 1.65
SFXN1-209ENST00000508290 CDHR2Q9BYE9 1310 aa25.37■■□□□ 1.65
SFXN1-209ENST00000508290 TIAM2Q8IVF5 1701 aa25.37■■□□□ 1.65
SFXN1-209ENST00000508290 KIF3CO14782 793 aa25.37■■□□□ 1.65
SFXN1-209ENST00000508290 G2E3Q7L622 706 aa25.37■■□□□ 1.65
SFXN1-209ENST00000508290 SP8Q8IXZ3 490 aa25.37■■□□□ 1.65
SFXN1-209ENST00000508290 LAMB2P55268 1798 aa25.36■■□□□ 1.65
SFXN1-209ENST00000508290 SLFN5Q08AF3 891 aa25.36■■□□□ 1.65
SFXN1-209ENST00000508290 SUPT20HQ8NEM7 779 aa25.36■■□□□ 1.65
SFXN1-209ENST00000508290 DNAAF4Q8WXU2 420 aa25.36■■□□□ 1.65
SFXN1-209ENST00000508290 DDX60Q8IY21 1712 aaKnown RBP25.35■■□□□ 1.65
SFXN1-209ENST00000508290 PDE8AO60658 829 aa25.35■■□□□ 1.65
SFXN1-209ENST00000508290 IGKV5-2P06315 115 aa25.35■■□□□ 1.65
SFXN1-209ENST00000508290 IARSP41252 1262 aaKnown RBP25.35■■□□□ 1.65
SFXN1-209ENST00000508290 LINS1Q8NG48 757 aa25.35■■□□□ 1.65
SFXN1-209ENST00000508290 DICER1Q9UPY3 1922 aaKnown RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms