RNA–Protein interactions for RNA: ENST00000506632.2

PDLIM5-209, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 907 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-209ENST00000506632 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
PDLIM5-209ENST00000506632 CHPF2Q9P2E5 772 aa11.82□□□□□ -0.52
PDLIM5-209ENST00000506632 ZNF219Q9P2Y4 722 aaPredicted RBP11.82□□□□□ -0.52
PDLIM5-209ENST00000506632 SNED1Q8TER0 1413 aa11.82□□□□□ -0.52
PDLIM5-209ENST00000506632 GTF2E1P29083 439 aaPredicted RBP11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 GNAI1P63096 354 aa11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 CALD1Q05682 793 aaKnown RBP11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 DUSP27Q5VZP5 1158 aa11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 TAOK3Q9H2K8 898 aa11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 KDM2BQ8NHM5 1336 aa11.81□□□□□ -0.52
PDLIM5-209ENST00000506632 GLTPD2A6NH11 291 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 ANP32CO43423 234 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 TOMM70O94826 608 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 ALDH1B1P30837 517 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 HOXA10P31260 410 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 AIMP1Q12904 312 aaKnown RBP11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 CCDC27Q2M243 656 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 HSP90AB3PQ58FF7 597 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 PPP1R42Q7Z4L9 355 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 DBF4Q9UBU7 674 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 RNF123Q5XPI4 1314 aa11.8□□□□□ -0.52
PDLIM5-209ENST00000506632 TCIRG1Q13488 830 aa11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 CCDC93Q567U6 631 aa11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 SLC10A5Q5PT55 438 aa11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 MRS2Q9HD23 443 aa11.79□□□□□ -0.52
PDLIM5-209ENST00000506632 WDR90Q96KV7 1748 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 HSPA6P17066 643 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 OLFM4Q6UX06 510 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 C3orf67Q6ZVT6 689 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 PLBD2Q8NHP8 589 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 RBM46Q8TBY0 533 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 CRAMP1Q96RY5 1269 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 HYPKQ9NX55 129 aa11.78□□□□□ -0.52
PDLIM5-209ENST00000506632 LAMB2P55268 1798 aa11.77□□□□□ -0.52
PDLIM5-209ENST00000506632 FKBP4Q02790 459 aaKnown RBP eCLIP11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 ANKRD13DQ6ZTN6 518 aa11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 WWC1Q8IX03 1113 aa11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 C8orf58Q8NAV2 365 aa11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 ISCA1Q9BUE6 129 aa11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 RRAGCQ9HB90 399 aa11.77□□□□□ -0.53
PDLIM5-209ENST00000506632 POTECB2RU33 542 aa11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 CC2D2BQ6DHV5 1058 aa11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 RTKN2Q8IZC4 609 aa11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 RPGRQ92834 1020 aaKnown RBP11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 NLRP3Q96P20 1036 aa11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 IL16Q14005 1332 aa11.76□□□□□ -0.53
PDLIM5-209ENST00000506632 ELL2O00472 640 aaPredicted RBP11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 VEGFAP15692 232 aaPredicted RBP11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 TRIM28Q13263 835 aaKnown RBP11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 SYNE4Q8N205 404 aa11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 TSPYL6Q8N831 410 aa11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 RBM17Q96I25 401 aaKnown RBP11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 PSMD1Q99460 953 aa11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 TRMT112Q9UI30 125 aaKnown RBP11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 SH3TC1Q8TE82 1336 aa11.75□□□□□ -0.53
PDLIM5-209ENST00000506632 DDX60Q8IY21 1712 aaKnown RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 HCLS1P14317 486 aaPredicted RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 FSTL1Q12841 308 aa11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 DPY19L2Q6NUT2 758 aa11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 SLC51AQ86UW1 340 aa11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 C16orf71Q8IYS4 520 aaPredicted RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 TSR2Q969E8 191 aaKnown RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 PHAXQ9H814 394 aaKnown RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 ZNF277Q9NRM2 450 aaPredicted RBP11.74□□□□□ -0.53
PDLIM5-209ENST00000506632 PPEF1O14829 653 aaPredicted RBP11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 ABCC4O15439 1325 aa11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 COL4A5P29400 1685 aa11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 IARSP41252 1262 aaKnown RBP11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 GRIPAP1Q4V328 841 aa11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 CCDC30Q5VVM6 783 aa11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 CHMP4AQ9BY43 222 aa11.73□□□□□ -0.53
PDLIM5-209ENST00000506632 ATP5J2-PTCD1G3V325 749 aa11.72□□□□□ -0.53
PDLIM5-209ENST00000506632 FZD9O00144 591 aa11.72□□□□□ -0.53
PDLIM5-209ENST00000506632 DDNO94850 711 aaPredicted RBP11.72□□□□□ -0.53
PDLIM5-209ENST00000506632 L3MBTL3Q96JM7 780 aaPredicted RBP11.72□□□□□ -0.53
PDLIM5-209ENST00000506632 ATP6V0A2Q9Y487 856 aa11.72□□□□□ -0.53
PDLIM5-209ENST00000506632 ZNF541Q9H0D2 1346 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 APLP1P51693 650 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 GOLGA2Q08379 1002 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 RIC3Q7Z5B4 369 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 WDR63Q8IWG1 891 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 SMC1BQ8NDV3 1235 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 FAM89AQ96GI7 184 aa11.71□□□□□ -0.53
PDLIM5-209ENST00000506632 SCN4AP35499 1836 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 FANCIQ9NVI1 1328 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 LRRC37AA6NMS7 1700 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 BBOX1O75936 387 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 GRAPQ13588 217 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 SF3B3Q15393 1217 aaKnown RBP11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 TWISTNBQ3B726 338 aaPredicted RBP11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 GRAPLQ8TC17 118 aaPredicted RBP11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 METTL22Q9BUU2 404 aaPredicted RBP11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 RTFDC1Q9BY42 306 aaPredicted RBP11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 TAF1P21675 1872 aa11.7□□□□□ -0.54
PDLIM5-209ENST00000506632 COL4A1P02462 1669 aa11.69□□□□□ -0.54
PDLIM5-209ENST00000506632 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
PDLIM5-209ENST00000506632 SP8Q8IXZ3 490 aa11.69□□□□□ -0.54
PDLIM5-209ENST00000506632 ZBTB38Q8NAP3 1195 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms