RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 TNRC6CQ9HCJ0 1690 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-209ENST00000504627 ARFGEF2Q9Y6D5 1785 aa23.35■■□□□ 1.33
SQSTM1-209ENST00000504627 TIAM2Q8IVF5 1701 aa23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 NTSR2O95665 410 aa23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 CALD1Q05682 793 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 HSP90AB3PQ58FF7 597 aa23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 RTKN2Q8IZC4 609 aa23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 UTP14AQ9BVJ6 771 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 CHPF2Q9P2E5 772 aa23.34■■□□□ 1.33
SQSTM1-209ENST00000504627 HOXB7P09629 217 aa23.33■■□□□ 1.33
SQSTM1-209ENST00000504627 FKBP4Q02790 459 aaKnown RBP eCLIP23.33■■□□□ 1.331e-6■■□□□ 13.4
SQSTM1-209ENST00000504627 FSTL1Q12841 308 aa23.33■■□□□ 1.33
SQSTM1-209ENST00000504627 OLFM4Q6UX06 510 aa23.33■■□□□ 1.33
SQSTM1-209ENST00000504627 YTHDC1Q96MU7 727 aaKnown RBP23.33■■□□□ 1.33
SQSTM1-209ENST00000504627 MBIPQ9NS73 344 aa23.33■■□□□ 1.33
SQSTM1-209ENST00000504627 RBM17Q96I25 401 aaKnown RBP23.32■■□□□ 1.32
SQSTM1-209ENST00000504627 NLRP3Q96P20 1036 aa23.32■■□□□ 1.32
SQSTM1-209ENST00000504627 DUSP27Q5VZP5 1158 aa23.31■■□□□ 1.32
SQSTM1-209ENST00000504627 SMC1BQ8NDV3 1235 aa23.31■■□□□ 1.32
SQSTM1-209ENST00000504627 DBF4Q9UBU7 674 aaPredicted RBP23.31■■□□□ 1.32
SQSTM1-209ENST00000504627 RIC1Q4ADV7 1423 aa23.31■■□□□ 1.32
SQSTM1-209ENST00000504627 GNAI1P63096 354 aa23.3■■□□□ 1.32
SQSTM1-209ENST00000504627 ZNF277Q9NRM2 450 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-209ENST00000504627 IFT57Q9NWB7 429 aa23.3■■□□□ 1.32
SQSTM1-209ENST00000504627 HOXA10P31260 410 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-209ENST00000504627 TCIRG1Q13488 830 aa23.29■■□□□ 1.32
SQSTM1-209ENST00000504627 DICER1Q9UPY3 1922 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-209ENST00000504627 ZNF853P0CG23 659 aa23.28■■□□□ 1.32
SQSTM1-209ENST00000504627 CC2D2BQ6DHV5 1058 aa23.28■■□□□ 1.32
SQSTM1-209ENST00000504627 SYNE4Q8N205 404 aa23.28■■□□□ 1.32
SQSTM1-209ENST00000504627 RNF123Q5XPI4 1314 aa23.28■■□□□ 1.32
SQSTM1-209ENST00000504627 TCERG1O14776 1098 aaKnown RBP23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 DDNO94850 711 aaPredicted RBP23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 ANKRD13DQ6ZTN6 518 aa23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 NLRP10Q86W26 655 aa23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 CRAMP1Q96RY5 1269 aa23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 TMX4Q9H1E5 349 aaPredicted RBP23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 HYPKQ9NX55 129 aa23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 TRMT112Q9UI30 125 aaKnown RBP23.27■■□□□ 1.32
SQSTM1-209ENST00000504627 ELL2O00472 640 aaPredicted RBP23.26■■□□□ 1.31
SQSTM1-209ENST00000504627 SLC10A5Q5PT55 438 aa23.26■■□□□ 1.31
SQSTM1-209ENST00000504627 C3orf67Q6ZVT6 689 aa23.26■■□□□ 1.31
SQSTM1-209ENST00000504627 PLBD2Q8NHP8 589 aa23.26■■□□□ 1.31
SQSTM1-209ENST00000504627 POTECB2RU33 542 aa23.25■■□□□ 1.31
SQSTM1-209ENST00000504627 PPEF1O14829 653 aaPredicted RBP23.25■■□□□ 1.31
SQSTM1-209ENST00000504627 IARSP41252 1262 aaKnown RBP23.25■■□□□ 1.31
SQSTM1-209ENST00000504627 PSMD1Q99460 953 aa23.25■■□□□ 1.31
SQSTM1-209ENST00000504627 HCLS1P14317 486 aaPredicted RBP23.24■■□□□ 1.31
SQSTM1-209ENST00000504627 HNRNPUQ00839 825 aaKnown RBP eCLIP23.24■■□□□ 1.31
SQSTM1-209ENST00000504627 GRIPAP1Q4V328 841 aa23.24■■□□□ 1.31
SQSTM1-209ENST00000504627 SH3TC1Q8TE82 1336 aa23.24■■□□□ 1.31
SQSTM1-209ENST00000504627 WDR90Q96KV7 1748 aa23.23■■□□□ 1.31
SQSTM1-209ENST00000504627 JDP2Q8WYK2 163 aa23.23■■□□□ 1.31
SQSTM1-209ENST00000504627 ZNF428Q96B54 188 aa23.23■■□□□ 1.31
SQSTM1-209ENST00000504627 IQCA1LA6NCM1 817 aa23.21■■□□□ 1.31
SQSTM1-209ENST00000504627 CHMP4AQ9BY43 222 aa23.21■■□□□ 1.31
SQSTM1-209ENST00000504627 ZBED9Q6R2W3 1325 aa23.21■■□□□ 1.31
SQSTM1-209ENST00000504627 ANKRD36CQ5JPF3 1778 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 ABCC4O15439 1325 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 ATP5J2-PTCD1G3V325 749 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 HTRA3P83110 453 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 GOLGA2Q08379 1002 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 RIC3Q7Z5B4 369 aa23.2■■□□□ 1.3
SQSTM1-209ENST00000504627 ZNF541Q9H0D2 1346 aa23.19■■□□□ 1.3
SQSTM1-209ENST00000504627 DDX46Q7L014 1031 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-209ENST00000504627 C8orf58Q8NAV2 365 aa23.19■■□□□ 1.3
SQSTM1-209ENST00000504627 FZD9O00144 591 aa23.18■■□□□ 1.3
SQSTM1-209ENST00000504627 LARGE2Q8N3Y3 721 aa23.18■■□□□ 1.3
SQSTM1-209ENST00000504627 L3MBTL3Q96JM7 780 aaPredicted RBP23.18■■□□□ 1.3
SQSTM1-209ENST00000504627 ISCA1Q9BUE6 129 aa23.18■■□□□ 1.3
SQSTM1-209ENST00000504627 ATP6V0A2Q9Y487 856 aa23.18■■□□□ 1.3
SQSTM1-209ENST00000504627 SNED1Q8TER0 1413 aa23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 BBOX1O75936 387 aa23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 CCDC30Q5VVM6 783 aa23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 DNAJC5GQ8N7S2 189 aa23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 FAM89AQ96GI7 184 aa23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 PHAXQ9H814 394 aaKnown RBP23.17■■□□□ 1.3
SQSTM1-209ENST00000504627 EIF6P56537 245 aaKnown RBP23.16■■□□□ 1.3
SQSTM1-209ENST00000504627 CCDC27Q2M243 656 aa23.16■■□□□ 1.3
SQSTM1-209ENST00000504627 CHADLQ6NUI6 762 aa23.16■■□□□ 1.3
SQSTM1-209ENST00000504627 SLC51AQ86UW1 340 aa23.16■■□□□ 1.3
SQSTM1-209ENST00000504627 RTL5Q5HYW3 569 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-209ENST00000504627 WWC1Q8IX03 1113 aa23.15■■□□□ 1.3
SQSTM1-209ENST00000504627 TSR2Q969E8 191 aaKnown RBP23.15■■□□□ 1.3
SQSTM1-209ENST00000504627 HACL1Q9UJ83 578 aa23.15■■□□□ 1.3
SQSTM1-209ENST00000504627 CENPBP07199 599 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 POTEIP0CG38 1075 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 POTEJP0CG39 1038 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 GRAPQ13588 217 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 GPC2Q8N158 579 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 SUPT20HQ8NEM7 779 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 GRAPLQ8TC17 118 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 TAF1DQ9H5J8 278 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 GJA3Q9Y6H8 435 aa23.14■■□□□ 1.29
SQSTM1-209ENST00000504627 PPIP5K2O43314 1243 aa23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 DDX58O95786 925 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 TRIM28Q13263 835 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 EAPPQ56P03 285 aaPredicted RBP23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 DPP8Q6V1X1 898 aaPredicted RBP23.13■■□□□ 1.29
SQSTM1-209ENST00000504627 SP8Q8IXZ3 490 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms