RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 APBB1O00213 710 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 ERC2O15083 957 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 ANP32AP39687 249 aaKnown RBP10.39□□□□□ -0.75
SF3A1-210ENST00000498259 UTP14AQ9BVJ6 771 aaKnown RBP10.39□□□□□ -0.75
SF3A1-210ENST00000498259 PLA2G12BQ9BX93 195 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 NYXQ9GZU5 481 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 OSBPL3Q9H4L5 887 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 COPRSQ9NQ92 184 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 TRMT112Q9UI30 125 aaKnown RBP10.39□□□□□ -0.75
SF3A1-210ENST00000498259 TBC1D2BQ9UPU7 963 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 SH3TC1Q8TE82 1336 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 IFIT2P09913 472 aaKnown RBP10.38□□□□□ -0.75
SF3A1-210ENST00000498259 TAF7LQ5H9L4 462 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 TRAPPC3LQ5T215 181 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 NLRP10Q86W26 655 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 ZNF34Q8IZ26 560 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 RHPN1Q8TCX5 695 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 CHMP3Q9Y3E7 222 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 RBM19Q9Y4C8 960 aaKnown RBP10.38□□□□□ -0.75
SF3A1-210ENST00000498259 ARFGEF2Q9Y6D5 1785 aa10.38□□□□□ -0.75
SF3A1-210ENST00000498259 TTC41PQ6P2S7 1318 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 PLSCR1O15162 318 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 GNPATO15228 680 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 PDE8AO60658 829 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 MX1P20591 662 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 GTF2E1P29083 439 aaPredicted RBP10.37□□□□□ -0.75
SF3A1-210ENST00000498259 RFC4P35249 363 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 CASP7P55210 303 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 IFIT5Q13325 482 aaKnown RBP10.37□□□□□ -0.75
SF3A1-210ENST00000498259 LMBR1LQ6UX01 489 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 PLEKHM2Q8IWE5 1019 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 LINC00116Q8NCU8 138 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 NARFQ9UHQ1 456 aa10.37□□□□□ -0.75
SF3A1-210ENST00000498259 TJP1Q07157 1748 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 IRS4O14654 1257 aaPredicted RBP10.36□□□□□ -0.75
SF3A1-210ENST00000498259 CIAO1O76071 339 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 TRIM37O94972 964 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 CAMTA2O94983 1202 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 IL15P40933 162 aaPredicted RBP10.36□□□□□ -0.75
SF3A1-210ENST00000498259 HLFQ16534 295 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 FAM182BQ5T319 152 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 FLAD1Q8NFF5 587 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 SETDB2Q96T68 719 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 STAP2Q9UGK3 403 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 NIP7Q9Y221 180 aaKnown RBP eCLIP10.36□□□□□ -0.75
SF3A1-210ENST00000498259 AKAP2Q9Y2D5 859 aa10.36□□□□□ -0.75
SF3A1-210ENST00000498259 ANKRD18BA2A2Z9 1011 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 CDC45O75419 566 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 GLRX3O76003 335 aaKnown RBP10.35□□□□□ -0.75
SF3A1-210ENST00000498259 GPTP24298 496 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 SSFA2P28290 1259 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 PDE1AP54750 535 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 FOXO4P98177 505 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 TTC22Q5TAA0 569 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 TPTE2Q6XPS3 522 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 FAM89AQ96GI7 184 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 KAZALD1Q96I82 304 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 NUP188Q5SRE5 1749 aa10.35□□□□□ -0.75
SF3A1-210ENST00000498259 NPHP1O15259 732 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 CSF1RP07333 972 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 SF3B2Q13435 895 aaKnown RBP10.34□□□□□ -0.75
SF3A1-210ENST00000498259 C8orf34Q49A92 452 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 CCDC152Q4G0S7 254 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 TICAM2Q86XR7 235 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 BCL11AQ9H165 835 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 GPR108Q9NPR9 543 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 ECHDC1Q9NTX5 307 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 BTAF1O14981 1849 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 AFDNP55196 1824 aaKnown RBP10.34□□□□□ -0.75
SF3A1-210ENST00000498259 RREB1Q92766 1687 aa10.34□□□□□ -0.75
SF3A1-210ENST00000498259 SMARCA5O60264 1052 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-210ENST00000498259 APBA3O96018 575 aa10.33□□□□□ -0.76
SF3A1-210ENST00000498259 CTSWP56202 376 aa10.33□□□□□ -0.76
SF3A1-210ENST00000498259 PTPN12Q05209 780 aaKnown RBP10.33□□□□□ -0.76
SF3A1-210ENST00000498259 RTL5Q5HYW3 569 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-210ENST00000498259 CNTROBQ8N137 903 aa10.33□□□□□ -0.76
SF3A1-210ENST00000498259 CEP126Q9P2H0 1117 aa10.33□□□□□ -0.76
SF3A1-210ENST00000498259 DAXXQ9UER7 740 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-210ENST00000498259 TRIM6-TRIM34B2RNG4 842 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 EYA2O00167 538 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 HIP1O00291 1037 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 REC8O95072 547 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 TXNRD1Q16881 649 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 EPHA10Q5JZY3 1008 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 AACSQ86V21 672 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 SKAP1Q86WV1 359 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 NBPF5PQ86XG9 351 aaPredicted RBP10.32□□□□□ -0.76
SF3A1-210ENST00000498259 IL27Q8NEV9 243 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 TTLL11Q8NHH1 800 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 ARHGEF1Q92888 912 aaKnown RBP10.32□□□□□ -0.76
SF3A1-210ENST00000498259 CDC5LQ99459 802 aaKnown RBP10.32□□□□□ -0.76
SF3A1-210ENST00000498259 SIL1Q9H173 461 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 IL1RAPL2Q9NP60 686 aa10.32□□□□□ -0.76
SF3A1-210ENST00000498259 COL5A3P25940 1745 aaPredicted RBP10.32□□□□□ -0.76
SF3A1-210ENST00000498259 USP42Q9H9J4 1324 aaKnown RBP10.32□□□□□ -0.76
SF3A1-210ENST00000498259 KCNA4P22459 653 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 IGHMBP2P38935 993 aaKnown RBP10.31□□□□□ -0.76
SF3A1-210ENST00000498259 RFX5P48382 616 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-210ENST00000498259 LRRFIP1Q32MZ4 808 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms