RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 AK2P54819 239 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 CAVIN1Q6NZI2 390 aaKnown RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 KLHDC4Q8TBB5 520 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 TM6SF1Q9BZW5 370 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 CCDC171Q6TFL3 1326 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 WDR33Q9C0J8 1336 aaKnown RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 GLI3P10071 1580 aa13.32□□□□□ -0.28
CMSS1-208ENST00000496116 IL2RBP14784 551 aa13.32□□□□□ -0.28
CMSS1-208ENST00000496116 FSD1Q9BTV5 496 aa13.32□□□□□ -0.28
CMSS1-208ENST00000496116 BOLA2Q9H3K6 86 aa13.32□□□□□ -0.28
CMSS1-208ENST00000496116 TLR7Q9NYK1 1049 aaKnown RBP13.32□□□□□ -0.28
CMSS1-208ENST00000496116 MBD3O95983 291 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 KCNJ4P48050 445 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 ZNF445P59923 1031 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 PTH1RQ03431 593 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 PTPN12Q05209 780 aaKnown RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 VPS53Q5VIR6 699 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 PRPF40BQ6NWY9 871 aaKnown RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 KCNB2Q92953 911 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 CARD10Q9BWT7 1032 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 SNRKQ9NRH2 765 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 UBR2Q8IWV8 1755 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 ATP5J2-PTCD1G3V325 749 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 PTCD1O75127 700 aaKnown RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 RFX5P48382 616 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 NMIQ13287 307 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 NECTIN1Q15223 517 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 NKX1-1Q15270 411 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 FOXD4L5Q5VV16 416 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 FOXD4L4Q8WXT5 416 aaPredicted RBP13.31□□□□□ -0.28
CMSS1-208ENST00000496116 CYP46A1Q9Y6A2 500 aa13.31□□□□□ -0.28
CMSS1-208ENST00000496116 ZSCAN23Q3MJ62 389 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 TNNI3KQ59H18 835 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 RNF20Q5VTR2 975 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 ANP32BQ92688 251 aaKnown RBP13.3□□□□□ -0.28
CMSS1-208ENST00000496116 MAP4K1Q92918 833 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 ZSCAN31Q96LW9 406 aaPredicted RBP13.3□□□□□ -0.28
CMSS1-208ENST00000496116 JAKMIP1Q96N16 626 aaKnown RBP13.3□□□□□ -0.28
CMSS1-208ENST00000496116 PDRG1Q9NUG6 133 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 FPGT-TNNI3KV9GXZ4 949 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 PSMA5P28066 241 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 FAM227BQ96M60 508 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 ZSWIM6Q9HCJ5 1215 aa13.3□□□□□ -0.28
CMSS1-208ENST00000496116 RBM8AQ9Y5S9 174 aaKnown RBP13.3□□□□□ -0.28
CMSS1-208ENST00000496116 NBPF26B4DH59 902 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 ATP5JP18859 108 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 TFCP2Q12800 502 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 NBPF14Q5TI25 921 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 NBPF10Q6P3W6 841 aaKnown RBP13.29□□□□□ -0.28
CMSS1-208ENST00000496116 RUFY3Q7L099 469 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 NBPF15Q8N660 670 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 GPT2Q8TD30 523 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 JARID2Q92833 1246 aaPredicted RBP13.29□□□□□ -0.28
CMSS1-208ENST00000496116 SH2B1Q9NRF2 756 aaPredicted RBP13.29□□□□□ -0.28
CMSS1-208ENST00000496116 CWC25Q9NXE8 425 aaPredicted RBP13.29□□□□□ -0.28
CMSS1-208ENST00000496116 PAPPAQ13219 1627 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 ABCA3Q99758 1704 aa13.29□□□□□ -0.28
CMSS1-208ENST00000496116 H7C1W4 665 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 NASPP49321 788 aaPredicted RBP13.28□□□□□ -0.28
CMSS1-208ENST00000496116 CASP7P55210 303 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 EVA1CP58658 441 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 CREB3L3Q68CJ9 461 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 SMC3Q9UQE7 1217 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 STRCQ7RTU9 1775 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 RFX7Q2KHR2 1363 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 KCPQ6ZWJ8 1503 aa13.28□□□□□ -0.28
CMSS1-208ENST00000496116 DBNLQ9UJU6 430 aaKnown RBP13.28□□□□□ -0.28
CMSS1-208ENST00000496116 MED23Q9ULK4 1368 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 NUP188Q5SRE5 1749 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 A0A0D9SFI3 127 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 ADCK5Q3MIX3 580 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 LMBR1LQ6UX01 489 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 DDX54Q8TDD1 881 aaKnown RBP13.27□□□□□ -0.28
CMSS1-208ENST00000496116 TRIM44Q96DX7 344 aaPredicted RBP13.27□□□□□ -0.28
CMSS1-208ENST00000496116 STRN4Q9NRL3 753 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 CHMP3Q9Y3E7 222 aa13.27□□□□□ -0.28
CMSS1-208ENST00000496116 CCDC191Q8NCU4 936 aa13.27□□□□□ -0.29
CMSS1-208ENST00000496116 HMG20BQ9P0W2 317 aa13.27□□□□□ -0.29
CMSS1-208ENST00000496116 ATP6V1DQ9Y5K8 247 aa13.27□□□□□ -0.29
CMSS1-208ENST00000496116 RPAP1Q9BWH6 1393 aaPredicted RBP13.26□□□□□ -0.29
CMSS1-208ENST00000496116 SLC27A2O14975 620 aa13.26□□□□□ -0.29
CMSS1-208ENST00000496116 CPA1P15085 419 aa13.26□□□□□ -0.29
CMSS1-208ENST00000496116 TTLL7Q6ZT98 887 aa13.26□□□□□ -0.29
CMSS1-208ENST00000496116 SYAP1Q96A49 352 aaPredicted RBP13.26□□□□□ -0.29
CMSS1-208ENST00000496116 SHANK3Q9BYB0 1731 aa13.26□□□□□ -0.29
CMSS1-208ENST00000496116 ZNF335Q9H4Z2 1342 aaPredicted RBP13.26□□□□□ -0.29
CMSS1-208ENST00000496116 TNS2Q63HR2 1409 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 STX6O43752 255 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 A1BGP04217 495 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 ZSCAN22P10073 491 aaPredicted RBP13.25□□□□□ -0.29
CMSS1-208ENST00000496116 PDIA4P13667 645 aaKnown RBP13.25□□□□□ -0.29
CMSS1-208ENST00000496116 FOXO4P98177 505 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 CCDC173Q0VFZ6 552 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 ANKRD1Q15327 319 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 CHAMP1Q96JM3 812 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 TMOD3Q9NYL9 352 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 JCADQ9P266 1359 aa13.25□□□□□ -0.29
CMSS1-208ENST00000496116 SYT1P21579 422 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms