RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 TRMT112Q9UI30 125 aaKnown RBP24.8■■□□□ 1.56
HDAC4-212ENST00000495497 IGKV5-2P06315 115 aa24.79■■□□□ 1.56
HDAC4-212ENST00000495497 C2CD5Q86YS7 1000 aa24.79■■□□□ 1.56
HDAC4-212ENST00000495497 DNAAF4Q8WXU2 420 aa24.79■■□□□ 1.56
HDAC4-212ENST00000495497 ANKRD36CQ5JPF3 1778 aa24.78■■□□□ 1.56
HDAC4-212ENST00000495497 TRIM28Q13263 835 aaKnown RBP24.78■■□□□ 1.56
HDAC4-212ENST00000495497 RTL5Q5HYW3 569 aaPredicted RBP24.78■■□□□ 1.56
HDAC4-212ENST00000495497 IBTKQ9P2D0 1353 aaPredicted RBP24.78■■□□□ 1.56
HDAC4-212ENST00000495497 KIAA1551Q9HCM1 1747 aa24.78■■□□□ 1.56
HDAC4-212ENST00000495497 PDE6BP35913 854 aa24.77■■□□□ 1.56
HDAC4-212ENST00000495497 CWF19L2Q2TBE0 894 aaKnown RBP24.77■■□□□ 1.56
HDAC4-212ENST00000495497 N4BP2Q86UW6 1770 aaPredicted RBP24.77■■□□□ 1.56
HDAC4-212ENST00000495497 NEXNQ0ZGT2 675 aa24.76■■□□□ 1.55
HDAC4-212ENST00000495497 JARID2Q92833 1246 aaPredicted RBP24.76■■□□□ 1.55
HDAC4-212ENST00000495497 FAM89AQ96GI7 184 aa24.76■■□□□ 1.55
HDAC4-212ENST00000495497 ANKRD31Q8N7Z5 1873 aa24.75■■□□□ 1.55
HDAC4-212ENST00000495497 H0YIN7 160 aa24.75■■□□□ 1.55
HDAC4-212ENST00000495497 BCAR3O75815 825 aa24.75■■□□□ 1.55
HDAC4-212ENST00000495497 C3orf67Q6ZVT6 689 aa24.75■■□□□ 1.55
HDAC4-212ENST00000495497 CCDC191Q8NCU4 936 aa24.75■■□□□ 1.55
HDAC4-212ENST00000495497 CWC25Q9NXE8 425 aaPredicted RBP24.75■■□□□ 1.55
HDAC4-212ENST00000495497 NOB1Q9ULX3 412 aaKnown RBP24.75■■□□□ 1.55
HDAC4-212ENST00000495497 NEURL1BA8MQ27 555 aa24.74■■□□□ 1.55
HDAC4-212ENST00000495497 HCLS1P14317 486 aaPredicted RBP24.74■■□□□ 1.55
HDAC4-212ENST00000495497 YBX3P16989 372 aaKnown RBP eCLIP24.74■■□□□ 1.55
HDAC4-212ENST00000495497 GPR162Q16538 588 aa24.74■■□□□ 1.55
HDAC4-212ENST00000495497 SLC4A10Q6U841 1118 aa24.74■■□□□ 1.55
HDAC4-212ENST00000495497 SH3TC1Q8TE82 1336 aa24.74■■□□□ 1.55
HDAC4-212ENST00000495497 CACNA1FO60840 1977 aa24.74■■□□□ 1.55
HDAC4-212ENST00000495497 ZNF622Q969S3 477 aaKnown RBP eCLIP24.73■■□□□ 1.55
HDAC4-212ENST00000495497 PIM2Q9P1W9 311 aa24.73■■□□□ 1.55
HDAC4-212ENST00000495497 PTPRCP08575 1304 aa24.72■■□□□ 1.55
HDAC4-212ENST00000495497 KLRG2A4D1S0 409 aaPredicted RBP24.72■■□□□ 1.55
HDAC4-212ENST00000495497 SLC10A5Q5PT55 438 aa24.72■■□□□ 1.55
HDAC4-212ENST00000495497 BEND3Q5T5X7 828 aa24.72■■□□□ 1.55
HDAC4-212ENST00000495497 RNF123Q5XPI4 1314 aa24.71■■□□□ 1.55
HDAC4-212ENST00000495497 SRGNP10124 158 aa24.71■■□□□ 1.55
HDAC4-212ENST00000495497 ZBTB38Q8NAP3 1195 aaPredicted RBP24.71■■□□□ 1.55
HDAC4-212ENST00000495497 LINS1Q8NG48 757 aa24.71■■□□□ 1.55
HDAC4-212ENST00000495497 BCS1LQ9Y276 419 aa24.71■■□□□ 1.55
HDAC4-212ENST00000495497 TNRC6CQ9HCJ0 1690 aaKnown RBP24.71■■□□□ 1.55
HDAC4-212ENST00000495497 BRPF1P55201 1214 aaPredicted RBP24.7■■□□□ 1.54
HDAC4-212ENST00000495497 PCCAP05165 728 aaPredicted RBP24.69■■□□□ 1.54
HDAC4-212ENST00000495497 GCKRQ14397 625 aa24.69■■□□□ 1.54
HDAC4-212ENST00000495497 PDZRN3Q9UPQ7 1066 aa24.69■■□□□ 1.54
HDAC4-212ENST00000495497 IRS4O14654 1257 aaPredicted RBP24.68■■□□□ 1.54
HDAC4-212ENST00000495497 DALRD3Q5D0E6 543 aaKnown RBP24.68■■□□□ 1.54
HDAC4-212ENST00000495497 MASTLQ96GX5 879 aa24.68■■□□□ 1.54
HDAC4-212ENST00000495497 NLRP3Q96P20 1036 aa24.68■■□□□ 1.54
HDAC4-212ENST00000495497 COL11A2P13942 1736 aaPredicted RBP24.68■■□□□ 1.54
HDAC4-212ENST00000495497 RIC1Q4ADV7 1423 aa24.68■■□□□ 1.54
HDAC4-212ENST00000495497 DCAF8L1A6NGE4 600 aa24.67■■□□□ 1.54
HDAC4-212ENST00000495497 FRAT1Q92837 279 aaPredicted RBP24.67■■□□□ 1.54
HDAC4-212ENST00000495497 NPR1P16066 1061 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 CRY2Q49AN0 593 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 STYK1Q6J9G0 422 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 TTLL6Q8N841 843 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 SRCIN1Q9C0H9 1055 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 ZNF219Q9P2Y4 722 aaPredicted RBP24.66■■□□□ 1.54
HDAC4-212ENST00000495497 TNNQ9UQP3 1299 aa24.66■■□□□ 1.54
HDAC4-212ENST00000495497 GOLGB1Q14789 3259 aaKnown RBP24.66■■□□□ 1.54
HDAC4-212ENST00000495497 H7C1W4 665 aa24.65■■□□□ 1.54
HDAC4-212ENST00000495497 KIF16BQ96L93 1317 aa24.64■■□□□ 1.54
HDAC4-212ENST00000495497 UBE3BQ7Z3V4 1068 aa24.64■■□□□ 1.54
HDAC4-212ENST00000495497 RPGRQ92834 1020 aaKnown RBP24.64■■□□□ 1.54
HDAC4-212ENST00000495497 ALDH1L1O75891 902 aa24.63■■□□□ 1.53
HDAC4-212ENST00000495497 CNKSR1Q969H4 720 aa24.63■■□□□ 1.53
HDAC4-212ENST00000495497 API5Q9BZZ5 524 aaKnown RBP24.63■■□□□ 1.53
HDAC4-212ENST00000495497 CASP7P55210 303 aa24.62■■□□□ 1.53
HDAC4-212ENST00000495497 BRCA1P38398 1863 aaKnown RBP24.62■■□□□ 1.53
HDAC4-212ENST00000495497 CDHR2Q9BYE9 1310 aa24.61■■□□□ 1.53
HDAC4-212ENST00000495497 UTRNP46939 3433 aa24.61■■□□□ 1.53
HDAC4-212ENST00000495497 HOXA10P31260 410 aaPredicted RBP24.61■■□□□ 1.53
HDAC4-212ENST00000495497 PRPF40BQ6NWY9 871 aaKnown RBP24.61■■□□□ 1.53
HDAC4-212ENST00000495497 ARHGAP45Q92619 1136 aa24.61■■□□□ 1.53
HDAC4-212ENST00000495497 RBM17Q96I25 401 aaKnown RBP24.61■■□□□ 1.53
HDAC4-212ENST00000495497 DLEC1Q9Y238 1755 aa24.61■■□□□ 1.53
HDAC4-212ENST00000495497 DDX60Q8IY21 1712 aaKnown RBP24.61■■□□□ 1.53
HDAC4-212ENST00000495497 PDE8AO60658 829 aa24.6■■□□□ 1.53
HDAC4-212ENST00000495497 TRIM27P14373 513 aa24.6■■□□□ 1.53
HDAC4-212ENST00000495497 CCDC85AQ96PX6 553 aaPredicted RBP24.6■■□□□ 1.53
HDAC4-212ENST00000495497 IPO8O15397 1037 aaKnown RBP24.59■■□□□ 1.53
HDAC4-212ENST00000495497 C21orf2O43822 256 aa24.59■■□□□ 1.53
HDAC4-212ENST00000495497 GRIN3BO60391 1043 aa24.59■■□□□ 1.53
HDAC4-212ENST00000495497 SF3B3Q15393 1217 aaKnown RBP24.59■■□□□ 1.53
HDAC4-212ENST00000495497 SLC51AQ86UW1 340 aa24.59■■□□□ 1.53
HDAC4-212ENST00000495497 CLUAP1Q96AJ1 413 aa24.59■■□□□ 1.53
HDAC4-212ENST00000495497 C9orf78Q9NZ63 289 aaPredicted RBP24.59■■□□□ 1.53
HDAC4-212ENST00000495497 RCAN3Q9UKA8 241 aa24.59■■□□□ 1.53
HDAC4-212ENST00000495497 GRM8O00222 908 aa24.58■■□□□ 1.53
HDAC4-212ENST00000495497 ALDH1B1P30837 517 aa24.58■■□□□ 1.53
HDAC4-212ENST00000495497 ZKSCAN2Q63HK3 967 aa24.58■■□□□ 1.53
HDAC4-212ENST00000495497 OLFM4Q6UX06 510 aa24.58■■□□□ 1.53
HDAC4-212ENST00000495497 ATF7IPQ6VMQ6 1270 aa24.58■■□□□ 1.53
HDAC4-212ENST00000495497 ABCC4O15439 1325 aa24.58■■□□□ 1.52
HDAC4-212ENST00000495497 ARHGAP27Q6ZUM4 889 aa24.57■■□□□ 1.52
HDAC4-212ENST00000495497 DDX46Q7L014 1031 aaKnown RBP24.57■■□□□ 1.52
HDAC4-212ENST00000495497 CRAMP1Q96RY5 1269 aa24.57■■□□□ 1.52
HDAC4-212ENST00000495497 LAMB2P55268 1798 aa24.57■■□□□ 1.52
HDAC4-212ENST00000495497 NBPF7P0C2Y1 421 aaPredicted RBP24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms