RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 SOGA3Q5TF21 947 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 C3orf67Q6ZVT6 689 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 RPGRQ92834 1020 aaKnown RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 DDX21Q9NR30 783 aaKnown RBP eCLIP12.5□□□□□ -0.41
MSH5-218ENST00000494646 ZNF277Q9NRM2 450 aaPredicted RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 MBIPQ9NS73 344 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 CHPF2Q9P2E5 772 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 ZC3H4Q9UPT8 1303 aaKnown RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 ABCC12Q96J65 1359 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 TNRC6CQ9HCJ0 1690 aaKnown RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 LTBP3Q9NS15 1303 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 ZNF316A6NFI3 1004 aaPredicted RBP12.49□□□□□ -0.41
MSH5-218ENST00000494646 DDNO94850 711 aaPredicted RBP12.49□□□□□ -0.41
MSH5-218ENST00000494646 HTRA3P83110 453 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 HDGFL1Q5TGJ6 251 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 DUSP27Q5VZP5 1158 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 SYNE4Q8N205 404 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 NLRP3Q96P20 1036 aa12.49□□□□□ -0.41
MSH5-218ENST00000494646 UTP14AQ9BVJ6 771 aaKnown RBP12.49□□□□□ -0.41
MSH5-218ENST00000494646 APLP1P51693 650 aa12.48□□□□□ -0.41
MSH5-218ENST00000494646 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
MSH5-218ENST00000494646 TCIRG1Q13488 830 aa12.48□□□□□ -0.41
MSH5-218ENST00000494646 PARP10Q53GL7 1025 aa12.48□□□□□ -0.41
MSH5-218ENST00000494646 SLC51AQ86UW1 340 aa12.48□□□□□ -0.41
MSH5-218ENST00000494646 RBM17Q96I25 401 aaKnown RBP12.48□□□□□ -0.41
MSH5-218ENST00000494646 TAF1P21675 1872 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 ZNF853P0CG23 659 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 HCLS1P14317 486 aaPredicted RBP12.47□□□□□ -0.41
MSH5-218ENST00000494646 HOXA10P31260 410 aaPredicted RBP12.47□□□□□ -0.41
MSH5-218ENST00000494646 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 HSP90AB3PQ58FF7 597 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 SLC10A5Q5PT55 438 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 ANKRD13DQ6ZTN6 518 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 NLRP10Q86W26 655 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 RTKN2Q8IZC4 609 aa12.47□□□□□ -0.41
MSH5-218ENST00000494646 TRMT112Q9UI30 125 aaKnown RBP12.47□□□□□ -0.41
MSH5-218ENST00000494646 ANKRD36CQ5JPF3 1778 aa12.46□□□□□ -0.41
MSH5-218ENST00000494646 ATP5J2-PTCD1G3V325 749 aa12.46□□□□□ -0.41
MSH5-218ENST00000494646 GNAI1P63096 354 aa12.46□□□□□ -0.41
MSH5-218ENST00000494646 FSTL1Q12841 308 aa12.46□□□□□ -0.41
MSH5-218ENST00000494646 DBF4Q9UBU7 674 aaPredicted RBP12.46□□□□□ -0.41
MSH5-218ENST00000494646 IARSP41252 1262 aaKnown RBP12.45□□□□□ -0.42
MSH5-218ENST00000494646 RTL5Q5HYW3 569 aaPredicted RBP12.45□□□□□ -0.42
MSH5-218ENST00000494646 DNAJC5GQ8N7S2 189 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 C8orf58Q8NAV2 365 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 SMC1BQ8NDV3 1235 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 CRAMP1Q96RY5 1269 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 PHAXQ9H814 394 aaKnown RBP12.45□□□□□ -0.42
MSH5-218ENST00000494646 IFT57Q9NWB7 429 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 SALL2Q9Y467 1007 aaPredicted RBP12.45□□□□□ -0.42
MSH5-218ENST00000494646 LAMB2P55268 1798 aa12.45□□□□□ -0.42
MSH5-218ENST00000494646 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
MSH5-218ENST00000494646 ANP32CO43423 234 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 HOXB7P09629 217 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 CALD1Q05682 793 aaKnown RBP12.44□□□□□ -0.42
MSH5-218ENST00000494646 PLBD2Q8NHP8 589 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 HYPKQ9NX55 129 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 WDR90Q96KV7 1748 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 PCNTO95613 3336 aa12.44□□□□□ -0.42
MSH5-218ENST00000494646 IBTKQ9P2D0 1353 aaPredicted RBP12.43□□□□□ -0.42
MSH5-218ENST00000494646 POTEIP0CG38 1075 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 POTEJP0CG39 1038 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 RIC3Q7Z5B4 369 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 TSR2Q969E8 191 aaKnown RBP12.43□□□□□ -0.42
MSH5-218ENST00000494646 FAM89AQ96GI7 184 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 MRS2Q9HD23 443 aa12.43□□□□□ -0.42
MSH5-218ENST00000494646 ABCC4O15439 1325 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 SH3TC1Q8TE82 1336 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 ZNF541Q9H0D2 1346 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 TSPYL6Q8N831 410 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 JDP2Q8WYK2 163 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 PSMD1Q99460 953 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 ISCA1Q9BUE6 129 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 TMX4Q9H1E5 349 aaPredicted RBP12.42□□□□□ -0.42
MSH5-218ENST00000494646 GJA3Q9Y6H8 435 aa12.42□□□□□ -0.42
MSH5-218ENST00000494646 FZD9O00144 591 aa12.41□□□□□ -0.42
MSH5-218ENST00000494646 RIC1Q4ADV7 1423 aa12.41□□□□□ -0.42
MSH5-218ENST00000494646 DDX46Q7L014 1031 aaKnown RBP12.41□□□□□ -0.42
MSH5-218ENST00000494646 LARGE2Q8N3Y3 721 aa12.41□□□□□ -0.42
MSH5-218ENST00000494646 JARID2Q92833 1246 aaPredicted RBP12.41□□□□□ -0.42
MSH5-218ENST00000494646 SCN4AP35499 1836 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 BBOX1O75936 387 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 EAPPQ56P03 285 aaPredicted RBP12.4□□□□□ -0.42
MSH5-218ENST00000494646 CHADLQ6NUI6 762 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 WWC1Q8IX03 1113 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 MYD88Q99836 296 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 TAF1DQ9H5J8 278 aaPredicted RBP12.4□□□□□ -0.42
MSH5-218ENST00000494646 CLEC11AQ9Y240 323 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 ATP6V0A2Q9Y487 856 aa12.4□□□□□ -0.42
MSH5-218ENST00000494646 DDX60Q8IY21 1712 aaKnown RBP12.4□□□□□ -0.43
MSH5-218ENST00000494646 RNF123Q5XPI4 1314 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 SNED1Q8TER0 1413 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 IQCA1LA6NCM1 817 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 EIF6P56537 245 aaKnown RBP12.39□□□□□ -0.43
MSH5-218ENST00000494646 GOLGA2Q08379 1002 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 CCDC30Q5VVM6 783 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 SP8Q8IXZ3 490 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 HACL1Q9UJ83 578 aa12.39□□□□□ -0.43
MSH5-218ENST00000494646 COL4A5P29400 1685 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms