RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TRMT2AQ8IZ69 625 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 TSC1Q92574 1164 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 DDX17Q92841 729 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 ACBD3Q9H3P7 528 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 BRMS1Q9HCU9 246 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 UBE2HP62256 183 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 GUCY1B3Q02153 619 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 PLEKHF1Q96S99 279 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 CCDC69A6NI79 296 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 PPP1R9BQ96SB3 815 aa19.07■□□□□ 0.64
CCDC88B-209ENST00000494080 MYOM2P54296 1465 aa19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 TTLL5Q6EMB2 1281 aa19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 TMCO3Q6UWJ1 677 aa19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 POLR3GO15318 223 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 STX6O43752 255 aa19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 TRIM22Q8IYM9 498 aa19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 AEBP2Q6ZN18 517 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-209ENST00000494080 CEP57L1Q8IYX8 460 aa19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 CCP110O43303 1012 aa19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 GTF2F1P35269 517 aaKnown RBP eCLIP19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 C17orf53Q8N3J3 647 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 SH2B1Q9NRF2 756 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 CCT2P78371 535 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 CCDC186Q7Z3E2 898 aa19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 CNPY2Q9Y2B0 182 aa19.05■□□□□ 0.64
CCDC88B-209ENST00000494080 ANKRD18BA2A2Z9 1011 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 HAND2P61296 217 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 BCORL1Q5H9F3 1711 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 PCMTD1Q96MG8 357 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 SERPINC1P01008 464 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 OLFM4Q6UX06 510 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 UBAC1Q9BSL1 405 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 CFAP45Q9UL16 551 aa19.04■□□□□ 0.64
CCDC88B-209ENST00000494080 TFIP11Q9UBB9 837 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 SOS1Q07889 1333 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 PLXNC1O60486 1568 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 CCDC70Q6NSX1 233 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 KRT222Q8N1A0 295 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 CCDC82Q8N4S0 544 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 NECAB1Q8N987 351 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 MINDY4BA8MYZ0 360 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 SLC3A2P08195 630 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 PIBF1Q8WXW3 757 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 NGLY1Q96IV0 654 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 TIGD1Q96MW7 591 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 USP19O94966 1318 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 HSP90AB3PQ58FF7 597 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 MYRIPQ8NFW9 859 aa19.03■□□□□ 0.64
CCDC88B-209ENST00000494080 ZNF165P49910 485 aa19.02■□□□□ 0.64
CCDC88B-209ENST00000494080 ANKRD20A12PQ8NF67 263 aa19.02■□□□□ 0.64
CCDC88B-209ENST00000494080 PNMA6EA0A0J9YXQ4 647 aa19.02■□□□□ 0.64
CCDC88B-209ENST00000494080 LMBRD1Q9NUN5 540 aa19.02■□□□□ 0.64
CCDC88B-209ENST00000494080 GJB2P29033 226 aa19.02■□□□□ 0.63
CCDC88B-209ENST00000494080 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.02■□□□□ 0.63
CCDC88B-209ENST00000494080 V9GYY5 206 aaPredicted RBP19.02■□□□□ 0.63
CCDC88B-209ENST00000494080 ADCY10Q96PN6 1610 aa19.02■□□□□ 0.63
CCDC88B-209ENST00000494080 SCAND2PQ9GZW5 306 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 JMYQ8N9B5 988 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 ERBB4Q15303 1308 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 KIF2AO00139 706 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 IPO7O95373 1038 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 KLHL34Q8N239 644 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 CCDC47Q96A33 483 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 LRRC2Q9BYS8 371 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 NAPBQ9H115 298 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 DDX21Q9NR30 783 aaKnown RBP eCLIP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 NBPF7P0C2Y1 421 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 CEP135Q66GS9 1140 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 SIRT1Q96EB6 747 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 TEX13AQ9BXU3 409 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 ZNF652Q9Y2D9 606 aa19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 RBM8AQ9Y5S9 174 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-209ENST00000494080 SFPQP23246 707 aaKnown RBP eCLIP19■□□□□ 0.63
CCDC88B-209ENST00000494080 SYNMO15061 1565 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 VGLL3A8MV65 326 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 RAB11FIP4Q86YS3 637 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 IL17REQ8NFR9 667 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 DCAF5Q96JK2 942 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 ZNF500O60304 480 aaPredicted RBP19■□□□□ 0.63
CCDC88B-209ENST00000494080 KIF20AO95235 890 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 ZNF790Q6PG37 636 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 ACSBG1Q96GR2 724 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 PAXBP1Q9Y5B6 917 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 ZNF213O14771 459 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 ATP2B2Q01814 1243 aa19■□□□□ 0.63
CCDC88B-209ENST00000494080 U2AF2P26368 475 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 KLHDC4Q8TBB5 520 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 USP26Q9BXU7 913 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 PRR36Q9H6K5 1346 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 URI1O94763 535 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 IL2RBP14784 551 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 CHMLP26374 656 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 BICC1Q9H694 974 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 ZSCAN22P10073 491 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 NEK1Q96PY6 1258 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 TMEM63CQ9P1W3 806 aa18.99■□□□□ 0.63
CCDC88B-209ENST00000494080 H0YHG0 523 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 IKQ13123 557 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 LRRIQ1Q96JM4 1722 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 KCNQ3O43525 872 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms