RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ARHGEF10O15013 1369 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 RAD21O60216 631 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ATP2B1P20020 1258 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SMIM5Q71RC9 77 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 BRINP3Q76B58 766 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CHST3Q7LGC8 479 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TFCP2Q12800 502 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MYOM1P52179 1685 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CYP27B1O15528 508 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MBD3O95983 291 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 LDHAL6AQ6ZMR3 332 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CCDC129Q6ZRS4 1044 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ERC1Q8IUD2 1116 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CCDC82Q8N4S0 544 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TMEM131LA2VDJ0 1609 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SYCE3A1L190 88 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 KIF20AO95235 890 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MCM5P33992 734 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 GUCY1B3Q02153 619 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TEX35Q5T0J7 233 aa12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CWC25Q9NXE8 425 aaPredicted RBP12.74□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ZKSCAN5Q9Y2L8 839 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 FAM98CQ17RN3 349 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 RNF20Q5VTR2 975 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 FAM227BQ96M60 508 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 FSD2A1L4K1 749 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 IFIT1P09914 478 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 HCLS1P14317 486 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ATP6V1AP38606 617 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PIBF1Q8WXW3 757 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ESYT1Q9BSJ8 1104 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 LMTK3Q96Q04 1460 aa12.73□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 RAB11FIP3O75154 756 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 IFIT5Q13325 482 aaKnown RBP12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DDB1Q16531 1140 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TERF1P54274 439 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CCDC158Q5M9N0 1113 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TLR7Q9NYK1 1049 aaKnown RBP12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CYP46A1Q9Y6A2 500 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CDK12Q9NYV4 1490 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PPLO60437 1756 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 KLHL34Q8N239 644 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DBNDD2Q9BQY9 259 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PALD1Q9ULE6 856 aa12.72□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CPLX1O14810 134 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 BEND3Q5T5X7 828 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 NFXL1Q6ZNB6 911 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 GOLGA6L1Q8N7Z2 621 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PDRG1Q9NUG6 133 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CHMLP26374 656 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CCT2P78371 535 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PKP1Q13835 747 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SYNE4Q8N205 404 aa12.71□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ZC3H13Q5T200 1668 aaKnown RBP12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 KLHL40Q2TBA0 621 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SLFNL1Q499Z3 407 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 RBM27Q9P2N5 1060 aaKnown RBP12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 RICTORQ6R327 1708 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 BLOC1S2Q6QNY1 142 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SPC24Q8NBT2 197 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 USP26Q9BXU7 913 aa12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ZNF219Q9P2Y4 722 aaPredicted RBP12.71□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PAXIP1Q6ZW49 1069 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SF3A1Q15459 793 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 RALYLQ86SE5 291 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TMX3Q96JJ7 454 aa12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 G3V3G9 751 aa12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 GPS2Q13227 327 aa12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 DCAF8Q5TAQ9 597 aa12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SAMD1Q6SPF0 538 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PRIMPOLQ96LW4 560 aa12.7□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 NMIQ13287 307 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 GCKRQ14397 625 aa12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CCDC144CPQ8IYA2 1237 aa12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 BICD2Q8TD16 824 aa12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 EAF2Q96CJ1 260 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SEC62Q99442 399 aaKnown RBP12.69□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 SNAP23O00161 211 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 BAG4O95429 457 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 HS1BP3Q53T59 392 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CREBRFQ8IUR6 639 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TFIP11Q9UBB9 837 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TRDNQ13061 729 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ERBB4Q15303 1308 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ADGRL3Q9HAR2 1447 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CHGBP05060 677 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 EPHA10Q5JZY3 1008 aa12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 LARP1BQ659C4 914 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 NOL7Q9UMY1 257 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 NEURL1BA8MQ27 555 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CALCOCO1Q9P1Z2 691 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TAF5LO75529 589 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 DZIP3Q86Y13 1208 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 CCDC112Q8NEF3 446 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 ALDH1L1O75891 902 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TIGD1Q96MW7 591 aa12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 METTL22Q9BUU2 404 aaPredicted RBP12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 PUS3Q9BZE2 481 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 RBM8AQ9Y5S9 174 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-207ENST00000493662 TPD52L1Q16890 204 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms