RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 PRIM1P49642 420 aaKnown RBP15.03■□□□□ -0
HMGN1-220ENST00000492280 TTLL7Q6ZT98 887 aa15.03■□□□□ -0
HMGN1-220ENST00000492280 CCDC83Q8IWF9 413 aa15.03■□□□□ -0
HMGN1-220ENST00000492280 METTL22Q9BUU2 404 aaPredicted RBP15.03■□□□□ -0
HMGN1-220ENST00000492280 SNRPA1P09661 255 aaKnown RBP15.02■□□□□ -0
HMGN1-220ENST00000492280 NASPP49321 788 aaPredicted RBP15.02■□□□□ -0
HMGN1-220ENST00000492280 ZNF589Q86UQ0 364 aaPredicted RBP15.02■□□□□ -0
HMGN1-220ENST00000492280 AFDNP55196 1824 aaKnown RBP15.02■□□□□ -0
HMGN1-220ENST00000492280 ADAMTS7Q9UKP4 1686 aa15.02■□□□□ -0
HMGN1-220ENST00000492280 SPATA31A3Q5VYP0 1347 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 A0A087WZG4 1122 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 A1BGP04217 495 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 TFCP2Q12800 502 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 BRINP3Q76B58 766 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 NECAB1Q8N987 351 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 RNF214Q8ND24 703 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 DCAF5Q96JK2 942 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 TTC14Q96N46 770 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 ZBTB3Q9H5J0 574 aa15.02□□□□□ -0.01
HMGN1-220ENST00000492280 RPAP1Q9BWH6 1393 aaPredicted RBP15.02□□□□□ -0.01
HMGN1-220ENST00000492280 GPATCH3Q96I76 525 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 FMNL2Q96PY5 1086 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 CHMP4AQ9BY43 222 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 USP42Q9H9J4 1324 aaKnown RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 NBPF26B4DH59 902 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 NBPF14Q5TI25 921 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 NBPF10Q6P3W6 841 aaKnown RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 CCDC129Q6ZRS4 1044 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 NBPF15Q8N660 670 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 CCDC85AQ96PX6 553 aaPredicted RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 DNAJC2Q99543 621 aaKnown RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 RBSNQ9H1K0 784 aa15.01□□□□□ -0.01
HMGN1-220ENST00000492280 DBNLQ9UJU6 430 aaKnown RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 RBM8AQ9Y5S9 174 aaKnown RBP15.01□□□□□ -0.01
HMGN1-220ENST00000492280 CCDC171Q6TFL3 1326 aa15□□□□□ -0.01
HMGN1-220ENST00000492280 MCM2P49736 904 aa15□□□□□ -0.01
HMGN1-220ENST00000492280 ERC1Q8IUD2 1116 aa15□□□□□ -0.01
HMGN1-220ENST00000492280 SEC62Q99442 399 aaKnown RBP15□□□□□ -0.01
HMGN1-220ENST00000492280 UTYO14607 1347 aa15□□□□□ -0.01
HMGN1-220ENST00000492280 PTPN12Q05209 780 aaKnown RBP14.99□□□□□ -0.01
HMGN1-220ENST00000492280 EVI5LQ96CN4 794 aa14.99□□□□□ -0.01
HMGN1-220ENST00000492280 DBNDD2Q9BQY9 259 aa14.99□□□□□ -0.01
HMGN1-220ENST00000492280 PTMSP20962 102 aa14.99□□□□□ -0.01
HMGN1-220ENST00000492280 ST3GAL1Q11201 340 aa14.99□□□□□ -0.01
HMGN1-220ENST00000492280 ZNF594Q96JF6 807 aaPredicted RBP14.99□□□□□ -0.01
HMGN1-220ENST00000492280 CNPY2Q9Y2B0 182 aa14.99□□□□□ -0.01
HMGN1-220ENST00000492280 LMBR1LQ6UX01 489 aa14.98□□□□□ -0.01
HMGN1-220ENST00000492280 DDX46Q7L014 1031 aaKnown RBP14.98□□□□□ -0.01
HMGN1-220ENST00000492280 CREB3L3Q68CJ9 461 aa14.98□□□□□ -0.01
HMGN1-220ENST00000492280 PDRG1Q9NUG6 133 aa14.98□□□□□ -0.01
HMGN1-220ENST00000492280 ARFGEF2Q9Y6D5 1785 aa14.98□□□□□ -0.01
HMGN1-220ENST00000492280 ZNF335Q9H4Z2 1342 aaPredicted RBP14.97□□□□□ -0.01
HMGN1-220ENST00000492280 FIBPO43427 364 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 RFX5P48382 616 aaPredicted RBP14.97□□□□□ -0.01
HMGN1-220ENST00000492280 INTS4Q96HW7 963 aaKnown RBP14.97□□□□□ -0.01
HMGN1-220ENST00000492280 COL15A1P39059 1388 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 SYT1P21579 422 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 STK3Q13188 491 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 USP48Q86UV5 1035 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 RUFY2Q8WXA3 655 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 LIMCH1Q9UPQ0 1083 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 GLI3P10071 1580 aa14.97□□□□□ -0.01
HMGN1-220ENST00000492280 ME3Q16798 604 aa14.96□□□□□ -0.01
HMGN1-220ENST00000492280 TNNI3KQ59H18 835 aa14.96□□□□□ -0.01
HMGN1-220ENST00000492280 TRIM44Q96DX7 344 aaPredicted RBP14.96□□□□□ -0.01
HMGN1-220ENST00000492280 FPGT-TNNI3KV9GXZ4 949 aa14.96□□□□□ -0.01
HMGN1-220ENST00000492280 XIRP1Q702N8 1843 aaKnown RBP14.96□□□□□ -0.01
HMGN1-220ENST00000492280 VPS37CA5D8V6 355 aaPredicted RBP14.95□□□□□ -0.02
HMGN1-220ENST00000492280 SLC27A2O14975 620 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 PPFIA3O75145 1194 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 GJB2P29033 226 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 NECTIN1Q15223 517 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 FAM173BQ6P4H8 233 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 FERMT3Q86UX7 667 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 ZCRB1Q8TBF4 217 aaKnown RBP14.95□□□□□ -0.02
HMGN1-220ENST00000492280 NEUROD6Q96NK8 337 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 SMC3Q9UQE7 1217 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 ZNF445P59923 1031 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 MPNDQ8N594 471 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 LRRC2Q9BYS8 371 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 TPCN1Q9ULQ1 816 aa14.95□□□□□ -0.02
HMGN1-220ENST00000492280 TIMM10P62072 90 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.94□□□□□ -0.028e-8■■□□□ 13
HMGN1-220ENST00000492280 CYP46A1Q9Y6A2 500 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 LRRC24Q50LG9 513 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 SLAIN2Q9P270 581 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 PKD1L3Q7Z443 1732 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 A0A0G2JLW4 131 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 ESPNB1AK53 854 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 STX6O43752 255 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 IL17RAQ96F46 866 aa14.94□□□□□ -0.02
HMGN1-220ENST00000492280 WDR17Q8IZU2 1322 aa14.93□□□□□ -0.02
HMGN1-220ENST00000492280 WDR33Q9C0J8 1336 aaKnown RBP14.93□□□□□ -0.02
HMGN1-220ENST00000492280 CASP7P55210 303 aa14.93□□□□□ -0.02
HMGN1-220ENST00000492280 ISY1Q9ULR0 285 aaKnown RBP14.93□□□□□ -0.02
HMGN1-220ENST00000492280 MRC1P22897 1456 aa14.93□□□□□ -0.02
HMGN1-220ENST00000492280 ZKSCAN1P17029 563 aaPredicted RBP14.93□□□□□ -0.02
HMGN1-220ENST00000492280 MAP4K1Q92918 833 aa14.93□□□□□ -0.02
HMGN1-220ENST00000492280 PUS3Q9BZE2 481 aaKnown RBP14.93□□□□□ -0.02
HMGN1-220ENST00000492280 COPRSQ9NQ92 184 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms