RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 HOXA10P31260 410 aaPredicted RBP23.43■■□□□ 1.34
HMGN1-219ENST00000491183 C3orf67Q6ZVT6 689 aa23.43■■□□□ 1.34
HMGN1-219ENST00000491183 C16orf71Q8IYS4 520 aaPredicted RBP23.43■■□□□ 1.34
HMGN1-219ENST00000491183 IFT57Q9NWB7 429 aa23.43■■□□□ 1.34
HMGN1-219ENST00000491183 ANKRD36CQ5JPF3 1778 aa23.42■■□□□ 1.34
HMGN1-219ENST00000491183 SLC10A5Q5PT55 438 aa23.42■■□□□ 1.34
HMGN1-219ENST00000491183 UTP14AQ9BVJ6 771 aaKnown RBP23.42■■□□□ 1.34
HMGN1-219ENST00000491183 POTECB2RU33 542 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 VEGFAP15692 232 aaPredicted RBP23.41■■□□□ 1.34
HMGN1-219ENST00000491183 GNAI1P63096 354 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 FKBP4Q02790 459 aaKnown RBP eCLIP23.41■■□□□ 1.34
HMGN1-219ENST00000491183 TCIRG1Q13488 830 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 HSP90AB3PQ58FF7 597 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 DPY19L2Q6NUT2 758 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 NLRP10Q86W26 655 aa23.41■■□□□ 1.34
HMGN1-219ENST00000491183 DBF4Q9UBU7 674 aaPredicted RBP23.41■■□□□ 1.34
HMGN1-219ENST00000491183 CALD1Q05682 793 aaKnown RBP23.4■■□□□ 1.34
HMGN1-219ENST00000491183 RTKN2Q8IZC4 609 aa23.4■■□□□ 1.34
HMGN1-219ENST00000491183 RPGRQ92834 1020 aaKnown RBP23.4■■□□□ 1.34
HMGN1-219ENST00000491183 SYNE4Q8N205 404 aa23.39■■□□□ 1.33
HMGN1-219ENST00000491183 PLBD2Q8NHP8 589 aa23.39■■□□□ 1.33
HMGN1-219ENST00000491183 CRAMP1Q96RY5 1269 aa23.39■■□□□ 1.33
HMGN1-219ENST00000491183 ZNF277Q9NRM2 450 aaPredicted RBP23.39■■□□□ 1.33
HMGN1-219ENST00000491183 SNED1Q8TER0 1413 aa23.39■■□□□ 1.33
HMGN1-219ENST00000491183 ELL2O00472 640 aaPredicted RBP23.38■■□□□ 1.33
HMGN1-219ENST00000491183 ANKRD13DQ6ZTN6 518 aa23.38■■□□□ 1.33
HMGN1-219ENST00000491183 NLRP3Q96P20 1036 aa23.38■■□□□ 1.33
HMGN1-219ENST00000491183 WDR90Q96KV7 1748 aa23.38■■□□□ 1.33
HMGN1-219ENST00000491183 CEP350Q5VT06 3117 aa23.38■■□□□ 1.33
HMGN1-219ENST00000491183 DDNO94850 711 aaPredicted RBP23.37■■□□□ 1.33
HMGN1-219ENST00000491183 FSTL1Q12841 308 aa23.37■■□□□ 1.33
HMGN1-219ENST00000491183 SLC51AQ86UW1 340 aa23.37■■□□□ 1.33
HMGN1-219ENST00000491183 C8orf58Q8NAV2 365 aa23.37■■□□□ 1.33
HMGN1-219ENST00000491183 RBM17Q96I25 401 aaKnown RBP23.37■■□□□ 1.33
HMGN1-219ENST00000491183 HYPKQ9NX55 129 aa23.37■■□□□ 1.33
HMGN1-219ENST00000491183 RNF123Q5XPI4 1314 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 ANP32CO43423 234 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 APLP1P51693 650 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 ZNF428Q96B54 188 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 ISCA1Q9BUE6 129 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 MRS2Q9HD23 443 aa23.35■■□□□ 1.33
HMGN1-219ENST00000491183 TRMT112Q9UI30 125 aaKnown RBP23.35■■□□□ 1.33
HMGN1-219ENST00000491183 HCLS1P14317 486 aaPredicted RBP23.34■■□□□ 1.33
HMGN1-219ENST00000491183 CC2D2BQ6DHV5 1058 aa23.34■■□□□ 1.33
HMGN1-219ENST00000491183 LAMB2P55268 1798 aa23.34■■□□□ 1.33
HMGN1-219ENST00000491183 TCERG1O14776 1098 aaKnown RBP23.33■■□□□ 1.33
HMGN1-219ENST00000491183 IARSP41252 1262 aaKnown RBP23.33■■□□□ 1.33
HMGN1-219ENST00000491183 CCDC27Q2M243 656 aa23.33■■□□□ 1.33
HMGN1-219ENST00000491183 SMC1BQ8NDV3 1235 aa23.33■■□□□ 1.33
HMGN1-219ENST00000491183 PSMD1Q99460 953 aa23.33■■□□□ 1.33
HMGN1-219ENST00000491183 PHAXQ9H814 394 aaKnown RBP23.33■■□□□ 1.33
HMGN1-219ENST00000491183 ATP5J2-PTCD1G3V325 749 aa23.32■■□□□ 1.32
HMGN1-219ENST00000491183 PPEF1O14829 653 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-219ENST00000491183 WWC1Q8IX03 1113 aa23.32■■□□□ 1.32
HMGN1-219ENST00000491183 SH3TC1Q8TE82 1336 aa23.32■■□□□ 1.32
HMGN1-219ENST00000491183 DNAJC5GQ8N7S2 189 aa23.31■■□□□ 1.32
HMGN1-219ENST00000491183 TSPYL6Q8N831 410 aa23.31■■□□□ 1.32
HMGN1-219ENST00000491183 TSR2Q969E8 191 aaKnown RBP23.3■■□□□ 1.32
HMGN1-219ENST00000491183 ABCC4O15439 1325 aa23.3■■□□□ 1.32
HMGN1-219ENST00000491183 ZNF541Q9H0D2 1346 aa23.3■■□□□ 1.32
HMGN1-219ENST00000491183 FZD9O00144 591 aa23.29■■□□□ 1.32
HMGN1-219ENST00000491183 HTRA3P83110 453 aa23.29■■□□□ 1.32
HMGN1-219ENST00000491183 GRIPAP1Q4V328 841 aa23.29■■□□□ 1.32
HMGN1-219ENST00000491183 TRIM28Q13263 835 aaKnown RBP23.28■■□□□ 1.32
HMGN1-219ENST00000491183 FAM89AQ96GI7 184 aa23.28■■□□□ 1.32
HMGN1-219ENST00000491183 ATP6V0A2Q9Y487 856 aa23.28■■□□□ 1.32
HMGN1-219ENST00000491183 COL4A5P29400 1685 aa23.28■■□□□ 1.32
HMGN1-219ENST00000491183 TAF1P21675 1872 aa23.28■■□□□ 1.32
HMGN1-219ENST00000491183 DDX60Q8IY21 1712 aaKnown RBP23.28■■□□□ 1.32
HMGN1-219ENST00000491183 NCBP3Q53F19 620 aaKnown RBP23.27■■□□□ 1.32
HMGN1-219ENST00000491183 RIC3Q7Z5B4 369 aa23.27■■□□□ 1.32
HMGN1-219ENST00000491183 L3MBTL3Q96JM7 780 aaPredicted RBP23.27■■□□□ 1.32
HMGN1-219ENST00000491183 BBOX1O75936 387 aa23.26■■□□□ 1.31
HMGN1-219ENST00000491183 GOLGA2Q08379 1002 aa23.26■■□□□ 1.31
HMGN1-219ENST00000491183 CCDC30Q5VVM6 783 aa23.26■■□□□ 1.31
HMGN1-219ENST00000491183 POTEIP0CG38 1075 aa23.25■■□□□ 1.31
HMGN1-219ENST00000491183 POTEJP0CG39 1038 aa23.25■■□□□ 1.31
HMGN1-219ENST00000491183 RTL5Q5HYW3 569 aaPredicted RBP23.24■■□□□ 1.31
HMGN1-219ENST00000491183 DDX46Q7L014 1031 aaKnown RBP23.24■■□□□ 1.31
HMGN1-219ENST00000491183 SP8Q8IXZ3 490 aa23.24■■□□□ 1.31
HMGN1-219ENST00000491183 JDP2Q8WYK2 163 aa23.24■■□□□ 1.31
HMGN1-219ENST00000491183 IL16Q14005 1332 aa23.24■■□□□ 1.31
HMGN1-219ENST00000491183 SCN4AP35499 1836 aa23.24■■□□□ 1.31
HMGN1-219ENST00000491183 GRAPQ13588 217 aa23.23■■□□□ 1.31
HMGN1-219ENST00000491183 SF3B3Q15393 1217 aaKnown RBP23.23■■□□□ 1.31
HMGN1-219ENST00000491183 GRAPLQ8TC17 118 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-219ENST00000491183 MYD88Q99836 296 aa23.23■■□□□ 1.31
HMGN1-219ENST00000491183 TAF1DQ9H5J8 278 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-219ENST00000491183 SALL2Q9Y467 1007 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-219ENST00000491183 IQCA1LA6NCM1 817 aa23.22■■□□□ 1.31
HMGN1-219ENST00000491183 LARGE2Q8N3Y3 721 aa23.22■■□□□ 1.31
HMGN1-219ENST00000491183 CHMP4AQ9BY43 222 aa23.22■■□□□ 1.31
HMGN1-219ENST00000491183 TMX4Q9H1E5 349 aaPredicted RBP23.22■■□□□ 1.31
HMGN1-219ENST00000491183 IRS4O14654 1257 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-219ENST00000491183 RTFDC1Q9BY42 306 aaPredicted RBP23.21■■□□□ 1.31
HMGN1-219ENST00000491183 AOC3Q16853 763 aa23.2■■□□□ 1.3
HMGN1-219ENST00000491183 TWISTNBQ3B726 338 aaPredicted RBP23.2■■□□□ 1.3
HMGN1-219ENST00000491183 CHADLQ6NUI6 762 aa23.2■■□□□ 1.3
HMGN1-219ENST00000491183 GPC2Q8N158 579 aa23.2■■□□□ 1.3
HMGN1-219ENST00000491183 ZBTB38Q8NAP3 1195 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms