RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, human

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDB1-204	ENST00000490751	ALDH1B1	P30837	517 aa		40.72	■■■■■ 4.11
LDB1-204	ENST00000490751	CCDC93	Q567U6	631 aa		40.71	■■■■■ 4.11
LDB1-204	ENST00000490751	UTP14A	Q9BVJ6	771 aa	Known RBP	40.69	■■■■■ 4.1
LDB1-204	ENST00000490751	TOMM70	O94826	608 aa		40.67	■■■■■ 4.1
LDB1-204	ENST00000490751	TCIRG1	Q13488	830 aa		40.67	■■■■■ 4.1
LDB1-204	ENST00000490751	RPGR	Q92834	1020 aa	Known RBP	40.67	■■■■■ 4.1
LDB1-204	ENST00000490751	ELL2	O00472	640 aa	Predicted RBP	40.66	■■■■■ 4.1
LDB1-204	ENST00000490751	OLFM4	Q6UX06	510 aa		40.66	■■■■■ 4.1
LDB1-204	ENST00000490751	NLRP10	Q86W26	655 aa		40.66	■■■■■ 4.1
LDB1-204	ENST00000490751	RRAGC	Q9HB90	399 aa		40.66	■■■■■ 4.1
LDB1-204	ENST00000490751	HYPK	Q9NX55	129 aa		40.66	■■■■■ 4.1
LDB1-204	ENST00000490751	GLTPD2	A6NH11	291 aa		40.65	■■■■■ 4.1
LDB1-204	ENST00000490751	CCDC27	Q2M243	656 aa		40.65	■■■■■ 4.1
LDB1-204	ENST00000490751	PLBD2	Q8NHP8	589 aa		40.64	■■■■■ 4.1
LDB1-204	ENST00000490751	RNF123	Q5XPI4	1314 aa		40.64	■■■■■ 4.1
LDB1-204	ENST00000490751	HOXA10	P31260	410 aa	Predicted RBP	40.63	■■■■■ 4.09
LDB1-204	ENST00000490751	ANKRD13D	Q6ZTN6	518 aa		40.63	■■■■■ 4.09
LDB1-204	ENST00000490751	C3orf67	Q6ZVT6	689 aa		40.63	■■■■■ 4.09
LDB1-204	ENST00000490751	C8orf58	Q8NAV2	365 aa		40.63	■■■■■ 4.09
LDB1-204	ENST00000490751	C16orf71	Q8IYS4	520 aa	Predicted RBP	40.62	■■■■■ 4.09
LDB1-204	ENST00000490751	SLC10A5	Q5PT55	438 aa		40.61	■■■■■ 4.09
LDB1-204	ENST00000490751	WWC1	Q8IX03	1113 aa		40.61	■■■■■ 4.09
LDB1-204	ENST00000490751	NLRP3	Q96P20	1036 aa		40.61	■■■■■ 4.09
LDB1-204	ENST00000490751	HSPA6	P17066	643 aa		40.6	■■■■■ 4.09
LDB1-204	ENST00000490751	FKBP4	Q02790	459 aa	Known RBP eCLIP	40.6	■■■■■ 4.09
LDB1-204	ENST00000490751	RTKN2	Q8IZC4	609 aa		40.6	■■■■■ 4.09
LDB1-204	ENST00000490751	LAMB2	P55268	1798 aa		40.6	■■■■■ 4.09
LDB1-204	ENST00000490751	RBM17	Q96I25	401 aa	Known RBP	40.59	■■■■■ 4.09
LDB1-204	ENST00000490751	TRMT112	Q9UI30	125 aa	Known RBP	40.58	■■■■■ 4.09
LDB1-204	ENST00000490751	TSR2	Q969E8	191 aa	Known RBP	40.57	■■■■■ 4.09
LDB1-204	ENST00000490751	CRAMP1	Q96RY5	1269 aa		40.57	■■■■■ 4.09
LDB1-204	ENST00000490751	DPY19L2	Q6NUT2	758 aa		40.56	■■■■■ 4.08
LDB1-204	ENST00000490751	RBM46	Q8TBY0	533 aa	Known RBP	40.56	■■■■■ 4.08
LDB1-204	ENST00000490751	SYNE4	Q8N205	404 aa		40.55	■■■■■ 4.08
LDB1-204	ENST00000490751	ZNF277	Q9NRM2	450 aa	Predicted RBP	40.55	■■■■■ 4.08
LDB1-204	ENST00000490751	SH3TC1	Q8TE82	1336 aa		40.55	■■■■■ 4.08
LDB1-204	ENST00000490751	SNED1	Q8TER0	1413 aa		40.55	■■■■■ 4.08
LDB1-204	ENST00000490751	WDR90	Q96KV7	1748 aa		40.54	■■■■■ 4.08
LDB1-204	ENST00000490751	NCBP3	Q53F19	620 aa	Known RBP	40.54	■■■■■ 4.08
LDB1-204	ENST00000490751	ZNF428	Q96B54	188 aa		40.54	■■■■■ 4.08
LDB1-204	ENST00000490751	ISCA1	Q9BUE6	129 aa		40.54	■■■■■ 4.08
LDB1-204	ENST00000490751	PHAX	Q9H814	394 aa	Known RBP	40.54	■■■■■ 4.08
LDB1-204	ENST00000490751	HCLS1	P14317	486 aa	Predicted RBP	40.53	■■■■■ 4.08
LDB1-204	ENST00000490751	TSPYL6	Q8N831	410 aa		40.53	■■■■■ 4.08
LDB1-204	ENST00000490751	ATP5J2-PTCD1	G3V325	749 aa		40.52	■■■■■ 4.08
LDB1-204	ENST00000490751	CC2D2B	Q6DHV5	1058 aa		40.52	■■■■■ 4.08
LDB1-204	ENST00000490751	PPEF1	O14829	653 aa	Predicted RBP	40.51	■■■■■ 4.08
LDB1-204	ENST00000490751	VEGFA	P15692	232 aa	Predicted RBP	40.51	■■■■■ 4.08
LDB1-204	ENST00000490751	GOLGA2	Q08379	1002 aa		40.51	■■■■■ 4.08
LDB1-204	ENST00000490751	CCDC30	Q5VVM6	783 aa		40.51	■■■■■ 4.08
LDB1-204	ENST00000490751	IL16	Q14005	1332 aa		40.5	■■■■■ 4.07
LDB1-204	ENST00000490751	CHMP4A	Q9BY43	222 aa		40.5	■■■■■ 4.07
LDB1-204	ENST00000490751	DDX60	Q8IY21	1712 aa	Known RBP	40.5	■■■■■ 4.07
LDB1-204	ENST00000490751	RIC3	Q7Z5B4	369 aa		40.49	■■■■■ 4.07
LDB1-204	ENST00000490751	TCERG1	O14776	1098 aa	Known RBP	40.48	■■■■■ 4.07
LDB1-204	ENST00000490751	PSMD1	Q99460	953 aa		40.48	■■■■■ 4.07
LDB1-204	ENST00000490751	SALL2	Q9Y467	1007 aa	Predicted RBP	40.48	■■■■■ 4.07
LDB1-204	ENST00000490751	ABCC4	O15439	1325 aa		40.47	■■■■■ 4.07
LDB1-204	ENST00000490751	IARS	P41252	1262 aa	Known RBP	40.47	■■■■■ 4.07
LDB1-204	ENST00000490751	SLC51A	Q86UW1	340 aa		40.47	■■■■■ 4.07
LDB1-204	ENST00000490751	DDN	O94850	711 aa	Predicted RBP	40.45	■■■■■ 4.07
LDB1-204	ENST00000490751	FAM9B	Q8IZU0	186 aa		40.45	■■■■■ 4.07
LDB1-204	ENST00000490751	POTEC	B2RU33	542 aa		40.44	■■■■■ 4.06
LDB1-204	ENST00000490751	FSTL1	Q12841	308 aa		40.44	■■■■■ 4.06
LDB1-204	ENST00000490751	FAM89A	Q96GI7	184 aa		40.44	■■■■■ 4.06
LDB1-204	ENST00000490751	TRIM28	Q13263	835 aa	Known RBP	40.43	■■■■■ 4.06
LDB1-204	ENST00000490751	GRIPAP1	Q4V328	841 aa		40.43	■■■■■ 4.06
LDB1-204	ENST00000490751	TWISTNB	Q3B726	338 aa	Predicted RBP	40.42	■■■■■ 4.06
LDB1-204	ENST00000490751	CEP350	Q5VT06	3117 aa		40.41	■■■■■ 4.06
LDB1-204	ENST00000490751	DDX46	Q7L014	1031 aa	Known RBP	40.4	■■■■■ 4.06
LDB1-204	ENST00000490751	MYD88	Q99836	296 aa		40.4	■■■■■ 4.06
LDB1-204	ENST00000490751	ATP6V0A2	Q9Y487	856 aa		40.4	■■■■■ 4.06
LDB1-204	ENST00000490751	TAF1	P21675	1872 aa		40.4	■■■■■ 4.06
LDB1-204	ENST00000490751	DDX58	O95786	925 aa	Known RBP	40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	RTL5	Q5HYW3	569 aa	Predicted RBP	40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	WDR63	Q8IWG1	891 aa		40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	SMC1B	Q8NDV3	1235 aa		40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	TMX4	Q9H1E5	349 aa	Predicted RBP	40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	ZNF541	Q9H0D2	1346 aa		40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	FANCI	Q9NVI1	1328 aa		40.39	■■■■■ 4.06
LDB1-204	ENST00000490751	APLP1	P51693	650 aa		40.38	■■■■■ 4.05
LDB1-204	ENST00000490751	STK31	Q9BXU1	1019 aa		40.38	■■■■■ 4.05
LDB1-204	ENST00000490751	BBOX1	O75936	387 aa		40.37	■■■■■ 4.05
LDB1-204	ENST00000490751	COL4A5	P29400	1685 aa		40.36	■■■■■ 4.05
LDB1-204	ENST00000490751	GRAP	Q13588	217 aa		40.35	■■■■■ 4.05
LDB1-204	ENST00000490751	GRAPL	Q8TC17	118 aa	Predicted RBP	40.35	■■■■■ 4.05
LDB1-204	ENST00000490751	JDP2	Q8WYK2	163 aa		40.35	■■■■■ 4.05
LDB1-204	ENST00000490751	FZD9	O00144	591 aa		40.34	■■■■■ 4.05
LDB1-204	ENST00000490751	METTL22	Q9BUU2	404 aa	Predicted RBP	40.34	■■■■■ 4.05
LDB1-204	ENST00000490751	SCN4A	P35499	1836 aa		40.33	■■■■■ 4.05
LDB1-204	ENST00000490751	IRS4	O14654	1257 aa	Predicted RBP	40.33	■■■■■ 4.05
LDB1-204	ENST00000490751	SF3B3	Q15393	1217 aa	Known RBP	40.32	■■■■■ 4.05
LDB1-204	ENST00000490751	SP8	Q8IXZ3	490 aa		40.32	■■■■■ 4.05
LDB1-204	ENST00000490751	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	40.32	■■■■■ 4.05
LDB1-204	ENST00000490751	L3MBTL3	Q96JM7	780 aa	Predicted RBP	40.32	■■■■■ 4.05
LDB1-204	ENST00000490751	MAP3K2	Q9Y2U5	619 aa		40.32	■■■■■ 4.05
LDB1-204	ENST00000490751	LARGE2	Q8N3Y3	721 aa		40.31	■■■■■ 4.04
LDB1-204	ENST00000490751	CCDC191	Q8NCU4	936 aa		40.31	■■■■■ 4.04
LDB1-204	ENST00000490751	KSR2	Q6VAB6	950 aa		40.3	■■■■■ 4.04
LDB1-204	ENST00000490751	CWC25	Q9NXE8	425 aa	Predicted RBP	40.29	■■■■■ 4.04

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms