RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	HSP90AB1	P08238	724 aa	Known RBP	11.79	□□□□□ -0.52
USP4-213	ENST00000488520	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.79	□□□□□ -0.52
USP4-213	ENST00000488520	KCNK17	Q96T54	332 aa		11.79	□□□□□ -0.52
USP4-213	ENST00000488520	RRAGC	Q9HB90	399 aa		11.79	□□□□□ -0.52
USP4-213	ENST00000488520	PIM2	Q9P1W9	311 aa		11.79	□□□□□ -0.52
USP4-213	ENST00000488520	CHRNA5	P30532	468 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	CRKL	P46109	303 aa	Known RBP	11.78	□□□□□ -0.52
USP4-213	ENST00000488520	MTHFS	P49914	203 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	TYW1B	Q6NUM6	668 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	NFATC2IP	Q8NCF5	419 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	RBM46	Q8TBY0	533 aa	Known RBP	11.78	□□□□□ -0.52
USP4-213	ENST00000488520	FBXW7	Q969H0	707 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	ADAM33	Q9BZ11	813 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	RNF181	Q9P0P0	153 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	ANKRD31	Q8N7Z5	1873 aa		11.78	□□□□□ -0.52
USP4-213	ENST00000488520	NRXN2	Q9P2S2	1712 aa		11.77	□□□□□ -0.52
USP4-213	ENST00000488520	PTPRE	P23469	700 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	DDR1	Q08345	913 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	DDX10	Q13206	875 aa	Known RBP	11.77	□□□□□ -0.53
USP4-213	ENST00000488520	DALRD3	Q5D0E6	543 aa	Known RBP	11.77	□□□□□ -0.53
USP4-213	ENST00000488520	C1orf141	Q5JVX7	400 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	AEBP1	Q8IUX7	1158 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	EPAS1	Q99814	870 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	PLEKHG2	Q9H7P9	1386 aa		11.77	□□□□□ -0.53
USP4-213	ENST00000488520	DMRTA1	Q5VZB9	504 aa		11.76	□□□□□ -0.53
USP4-213	ENST00000488520	KLRG1	Q96E93	195 aa		11.76	□□□□□ -0.53
USP4-213	ENST00000488520	KDM2B	Q8NHM5	1336 aa		11.76	□□□□□ -0.53
USP4-213	ENST00000488520	FER1L6	Q2WGJ9	1857 aa		11.76	□□□□□ -0.53
USP4-213	ENST00000488520	AMOT	Q4VCS5	1084 aa		11.75	□□□□□ -0.53
USP4-213	ENST00000488520	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.75	□□□□□ -0.53
USP4-213	ENST00000488520	KCNV2	Q8TDN2	545 aa		11.75	□□□□□ -0.53
USP4-213	ENST00000488520	DDX12P	Q92771	950 aa		11.75	□□□□□ -0.53
USP4-213	ENST00000488520	USP42	Q9H9J4	1324 aa	Known RBP	11.75	□□□□□ -0.53
USP4-213	ENST00000488520	UBR2	Q8IWV8	1755 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	TK2	O00142	265 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	RASSF7	Q02833	373 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	FSTL1	Q12841	308 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	USPL1	Q5W0Q7	1092 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	SULT6B1	Q6IMI4	303 aa		11.74	□□□□□ -0.53
USP4-213	ENST00000488520	POLRMT	O00411	1230 aa	Known RBP	11.73	□□□□□ -0.53
USP4-213	ENST00000488520	ZPR1	O75312	459 aa		11.73	□□□□□ -0.53
USP4-213	ENST00000488520	TM4SF1	P30408	202 aa		11.73	□□□□□ -0.53
USP4-213	ENST00000488520	CNGB1	Q14028	1251 aa	Predicted RBP	11.73	□□□□□ -0.53
USP4-213	ENST00000488520	INTS5	Q6P9B9	1019 aa	Known RBP	11.73	□□□□□ -0.53
USP4-213	ENST00000488520	ADGRD1	Q6QNK2	874 aa		11.73	□□□□□ -0.53
USP4-213	ENST00000488520	DNAJC10	Q8IXB1	793 aa		11.73	□□□□□ -0.53
USP4-213	ENST00000488520	COL11A2	P13942	1736 aa	Predicted RBP	11.72	□□□□□ -0.53
USP4-213	ENST00000488520	MORC1	Q86VD1	984 aa		11.72	□□□□□ -0.53
USP4-213	ENST00000488520	SLC39A6	Q13433	755 aa		11.71	□□□□□ -0.53
USP4-213	ENST00000488520	JMY	Q8N9B5	988 aa		11.71	□□□□□ -0.53
USP4-213	ENST00000488520	LGR6	Q9HBX8	967 aa		11.71	□□□□□ -0.53
USP4-213	ENST00000488520	SLX4	Q8IY92	1834 aa		11.71	□□□□□ -0.54
USP4-213	ENST00000488520	SIPA1L3	O60292	1781 aa	Predicted RBP	11.71	□□□□□ -0.54
USP4-213	ENST00000488520	ARFGEF2	Q9Y6D5	1785 aa		11.7	□□□□□ -0.54
USP4-213	ENST00000488520	NBR1	Q14596	966 aa		11.7	□□□□□ -0.54
USP4-213	ENST00000488520	SMC1B	Q8NDV3	1235 aa		11.7	□□□□□ -0.54
USP4-213	ENST00000488520	COL15A1	P39059	1388 aa		11.69	□□□□□ -0.54
USP4-213	ENST00000488520	SOS1	Q07889	1333 aa	Predicted RBP	11.69	□□□□□ -0.54
USP4-213	ENST00000488520	PRELP	P51888	382 aa		11.69	□□□□□ -0.54
USP4-213	ENST00000488520	NFIX	Q14938	502 aa		11.69	□□□□□ -0.54
USP4-213	ENST00000488520	SLC4A5	Q9BY07	1137 aa		11.69	□□□□□ -0.54
USP4-213	ENST00000488520	SLC52A2	Q9HAB3	445 aa		11.69	□□□□□ -0.54
USP4-213	ENST00000488520	PPP1R3G	B7ZBB8	358 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	SERPINB2	P05120	415 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	HMOX1	P09601	288 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	CYP19A1	P11511	503 aa	Predicted RBP	11.68	□□□□□ -0.54
USP4-213	ENST00000488520	IL13	P35225	146 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	AKAP4	Q5JQC9	854 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	CC2D1B	Q5T0F9	858 aa	Known RBP	11.68	□□□□□ -0.54
USP4-213	ENST00000488520	BICDL1	Q6ZP65	573 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	TNS4	Q8IZW8	715 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	NARF	Q9UHQ1	456 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	ZBTB1	Q9Y2K1	713 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	SCN7A	Q01118	1682 aa		11.68	□□□□□ -0.54
USP4-213	ENST00000488520	CARMIL3	Q8ND23	1372 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	GRXCR2	A6NFK2	248 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	GLTPD2	A6NH11	291 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	PER1	O15534	1290 aa	Predicted RBP	11.67	□□□□□ -0.54
USP4-213	ENST00000488520	RNMT	O43148	476 aa	Known RBP	11.67	□□□□□ -0.54
USP4-213	ENST00000488520	VEGFA	P15692	232 aa	Predicted RBP	11.67	□□□□□ -0.54
USP4-213	ENST00000488520	LMNB1	P20700	586 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	CANX	P27824	592 aa	Known RBP	11.67	□□□□□ -0.54
USP4-213	ENST00000488520	C2CD5	Q86YS7	1000 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	TTLL6	Q8N841	843 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	RNF166	Q96A37	237 aa	Predicted RBP	11.67	□□□□□ -0.54
USP4-213	ENST00000488520	ZBED2	Q9BTP6	218 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	BCOR	Q6W2J9	1755 aa		11.67	□□□□□ -0.54
USP4-213	ENST00000488520	MRC1	P22897	1456 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520		H0YIN7	160 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520	HR	O43593	1189 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520	C6orf132	Q5T0Z8	1188 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520	CCDC24	Q8N4L8	307 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520	VPS9D1	Q9Y2B5	631 aa		11.66	□□□□□ -0.54
USP4-213	ENST00000488520	SCN4A	P35499	1836 aa		11.65	□□□□□ -0.54
USP4-213	ENST00000488520	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.65	□□□□□ -0.54
USP4-213	ENST00000488520	HSPA1A	P0DMV8	641 aa	Known RBP	11.65	□□□□□ -0.54
USP4-213	ENST00000488520	HSPA1B	P0DMV9	641 aa	Known RBP	11.65	□□□□□ -0.54
USP4-213	ENST00000488520	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
USP4-213	ENST00000488520	NFKBIE	O00221	500 aa		11.64	□□□□□ -0.55
USP4-213	ENST00000488520	MAP3K7	O43318	606 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms