RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 WDR90Q96KV7 1748 aa32.07■■■□□ 2.72
LIME1-206ENST00000487026 PPP1R42Q7Z4L9 355 aa32.07■■■□□ 2.72
LIME1-206ENST00000487026 IBTKQ9P2D0 1353 aaPredicted RBP32.07■■■□□ 2.72
LIME1-206ENST00000487026 PARP10Q53GL7 1025 aa32.06■■■□□ 2.72
LIME1-206ENST00000487026 SYNE4Q8N205 404 aa32.06■■■□□ 2.72
LIME1-206ENST00000487026 HOXA10P31260 410 aaPredicted RBP32.05■■■□□ 2.72
LIME1-206ENST00000487026 SLC51AQ86UW1 340 aa32.04■■■□□ 2.72
LIME1-206ENST00000487026 UTP14AQ9BVJ6 771 aaKnown RBP32.04■■■□□ 2.72
LIME1-206ENST00000487026 DDX21Q9NR30 783 aaKnown RBP eCLIP32.04■■■□□ 2.72
LIME1-206ENST00000487026 TCERG1O14776 1098 aaKnown RBP32.03■■■□□ 2.72
LIME1-206ENST00000487026 RBM17Q96I25 401 aaKnown RBP32.02■■■□□ 2.72
LIME1-206ENST00000487026 CHPF2Q9P2E5 772 aa32.02■■■□□ 2.72
LIME1-206ENST00000487026 RIC1Q4ADV7 1423 aa32.01■■■□□ 2.72
LIME1-206ENST00000487026 APAF1O14727 1248 aa32.01■■■□□ 2.71
LIME1-206ENST00000487026 IARSP41252 1262 aaKnown RBP32■■■□□ 2.71
LIME1-206ENST00000487026 HDGFL1Q5TGJ6 251 aa32■■■□□ 2.71
LIME1-206ENST00000487026 ZNF428Q96B54 188 aa32■■■□□ 2.71
LIME1-206ENST00000487026 CFAP44Q96MT7 982 aa32■■■□□ 2.71
LIME1-206ENST00000487026 NLRP3Q96P20 1036 aa32■■■□□ 2.71
LIME1-206ENST00000487026 ZNF541Q9H0D2 1346 aa32■■■□□ 2.71
LIME1-206ENST00000487026 POTEIP0CG38 1075 aa31.99■■■□□ 2.71
LIME1-206ENST00000487026 POTEJP0CG39 1038 aa31.99■■■□□ 2.71
LIME1-206ENST00000487026 SLC10A5Q5PT55 438 aa31.99■■■□□ 2.71
LIME1-206ENST00000487026 NLRP10Q86W26 655 aa31.99■■■□□ 2.71
LIME1-206ENST00000487026 CRAMP1Q96RY5 1269 aa31.99■■■□□ 2.71
LIME1-206ENST00000487026 TCIRG1Q13488 830 aa31.98■■■□□ 2.71
LIME1-206ENST00000487026 KLRG1Q96E93 195 aa31.98■■■□□ 2.71
LIME1-206ENST00000487026 MBIPQ9NS73 344 aa31.98■■■□□ 2.71
LIME1-206ENST00000487026 HSP90AB3PQ58FF7 597 aa31.97■■■□□ 2.71
LIME1-206ENST00000487026 PSMD1Q99460 953 aa31.97■■■□□ 2.71
LIME1-206ENST00000487026 SNED1Q8TER0 1413 aa31.97■■■□□ 2.71
LIME1-206ENST00000487026 PPEF1O14829 653 aaPredicted RBP31.96■■■□□ 2.71
LIME1-206ENST00000487026 DUSP27Q5VZP5 1158 aa31.96■■■□□ 2.71
LIME1-206ENST00000487026 CC2D2BQ6DHV5 1058 aa31.96■■■□□ 2.71
LIME1-206ENST00000487026 HCLS1P14317 486 aaPredicted RBP31.95■■■□□ 2.71
LIME1-206ENST00000487026 HOXB7P09629 217 aa31.94■■■□□ 2.7
LIME1-206ENST00000487026 L3MBTL3Q96JM7 780 aaPredicted RBP31.94■■■□□ 2.7
LIME1-206ENST00000487026 TRMT112Q9UI30 125 aaKnown RBP31.94■■■□□ 2.7
LIME1-206ENST00000487026 FZD9O00144 591 aa31.93■■■□□ 2.7
LIME1-206ENST00000487026 ZNF853P0CG23 659 aa31.93■■■□□ 2.7
LIME1-206ENST00000487026 CHADLQ6NUI6 762 aa31.93■■■□□ 2.7
LIME1-206ENST00000487026 IQCA1LA6NCM1 817 aa31.92■■■□□ 2.7
LIME1-206ENST00000487026 CCDC184Q52MB2 194 aa31.92■■■□□ 2.7
LIME1-206ENST00000487026 JDP2Q8WYK2 163 aa31.92■■■□□ 2.7
LIME1-206ENST00000487026 TAF1DQ9H5J8 278 aaPredicted RBP31.92■■■□□ 2.7
LIME1-206ENST00000487026 DBF4Q9UBU7 674 aaPredicted RBP31.92■■■□□ 2.7
LIME1-206ENST00000487026 ANKRD13DQ6ZTN6 518 aa31.91■■■□□ 2.7
LIME1-206ENST00000487026 ANKRD36CQ5JPF3 1778 aa31.91■■■□□ 2.7
LIME1-206ENST00000487026 PLBD2Q8NHP8 589 aa31.9■■■□□ 2.7
LIME1-206ENST00000487026 ABCC4O15439 1325 aa31.9■■■□□ 2.7
LIME1-206ENST00000487026 RNF123Q5XPI4 1314 aa31.9■■■□□ 2.7
LIME1-206ENST00000487026 ELL2O00472 640 aaPredicted RBP31.89■■■□□ 2.7
LIME1-206ENST00000487026 IFT57Q9NWB7 429 aa31.89■■■□□ 2.7
LIME1-206ENST00000487026 HYPKQ9NX55 129 aa31.88■■■□□ 2.69
LIME1-206ENST00000487026 ATP6V0A2Q9Y487 856 aa31.88■■■□□ 2.69
LIME1-206ENST00000487026 SH3TC1Q8TE82 1336 aa31.88■■■□□ 2.69
LIME1-206ENST00000487026 COL4A5P29400 1685 aa31.88■■■□□ 2.69
LIME1-206ENST00000487026 ATP5J2-PTCD1G3V325 749 aa31.87■■■□□ 2.69
LIME1-206ENST00000487026 GNAI1P63096 354 aa31.87■■■□□ 2.69
LIME1-206ENST00000487026 GRIPAP1Q4V328 841 aa31.87■■■□□ 2.69
LIME1-206ENST00000487026 EAPPQ56P03 285 aaPredicted RBP31.87■■■□□ 2.69
LIME1-206ENST00000487026 LARGE2Q8N3Y3 721 aa31.87■■■□□ 2.69
LIME1-206ENST00000487026 HACL1Q9UJ83 578 aa31.87■■■□□ 2.69
LIME1-206ENST00000487026 JMYQ8N9B5 988 aa31.86■■■□□ 2.69
LIME1-206ENST00000487026 TMX4Q9H1E5 349 aaPredicted RBP31.86■■■□□ 2.69
LIME1-206ENST00000487026 GJA3Q9Y6H8 435 aa31.86■■■□□ 2.69
LIME1-206ENST00000487026 SCN4AP35499 1836 aa31.85■■■□□ 2.69
LIME1-206ENST00000487026 GPC2Q8N158 579 aa31.85■■■□□ 2.69
LIME1-206ENST00000487026 ISCA1Q9BUE6 129 aa31.85■■■□□ 2.69
LIME1-206ENST00000487026 EIF6P56537 245 aaKnown RBP31.84■■■□□ 2.69
LIME1-206ENST00000487026 CALD1Q05682 793 aaKnown RBP31.84■■■□□ 2.69
LIME1-206ENST00000487026 LDHDQ86WU2 507 aa31.84■■■□□ 2.69
LIME1-206ENST00000487026 BBOX1O75936 387 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 EPHX2P34913 555 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 DDX46Q7L014 1031 aaKnown RBP31.83■■■□□ 2.69
LIME1-206ENST00000487026 C8orf58Q8NAV2 365 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 FAM89AQ96GI7 184 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 PHAXQ9H814 394 aaKnown RBP31.83■■■□□ 2.69
LIME1-206ENST00000487026 CLEC11AQ9Y240 323 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 LAMB2P55268 1798 aa31.83■■■□□ 2.69
LIME1-206ENST00000487026 PPIP5K2O43314 1243 aa31.81■■■□□ 2.68
LIME1-206ENST00000487026 AOC3Q16853 763 aa31.81■■■□□ 2.68
LIME1-206ENST00000487026 RTL5Q5HYW3 569 aaPredicted RBP31.81■■■□□ 2.68
LIME1-206ENST00000487026 SP8Q8IXZ3 490 aa31.81■■■□□ 2.68
LIME1-206ENST00000487026 IFFO2Q5TF58 517 aa31.8■■■□□ 2.68
LIME1-206ENST00000487026 GRAPQ13588 217 aa31.79■■■□□ 2.68
LIME1-206ENST00000487026 RIC3Q7Z5B4 369 aa31.79■■■□□ 2.68
LIME1-206ENST00000487026 NIM1KQ8IY84 436 aa31.79■■■□□ 2.68
LIME1-206ENST00000487026 GRAPLQ8TC17 118 aaPredicted RBP31.79■■■□□ 2.68
LIME1-206ENST00000487026 DPP8Q6V1X1 898 aaPredicted RBP31.78■■■□□ 2.68
LIME1-206ENST00000487026 PCNTO95613 3336 aa31.78■■■□□ 2.68
LIME1-206ENST00000487026 ZEB1P37275 1124 aaPredicted RBP31.77■■■□□ 2.68
LIME1-206ENST00000487026 MPNDQ8N594 471 aa31.77■■■□□ 2.68
LIME1-206ENST00000487026 TAF1P21675 1872 aa31.77■■■□□ 2.68
LIME1-206ENST00000487026 ITGBL1O95965 494 aaPredicted RBP31.76■■■□□ 2.67
LIME1-206ENST00000487026 GOLGA2Q08379 1002 aa31.76■■■□□ 2.67
LIME1-206ENST00000487026 PNMA8AQ86V59 439 aaPredicted RBP31.76■■■□□ 2.67
LIME1-206ENST00000487026 RTFDC1Q9BY42 306 aaPredicted RBP31.76■■■□□ 2.67
LIME1-206ENST00000487026 CREBZFQ9NS37 354 aa31.76■■■□□ 2.67
LIME1-206ENST00000487026 PASKQ96RG2 1323 aa31.75■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms