RNA–Protein interactions for RNA: ENST00000485439.5

RPL35A-208, Transcript of ribosomal protein L35a, human

TSL 2

Gene RPL35A, Length 677 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPL35A-208	ENST00000485439	CALD1	Q05682	793 aa	Known RBP	10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	HDGFL1	Q5TGJ6	251 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	SUSD4	Q5VX71	490 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	PPP1R42	Q7Z4L9	355 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	XAGE3	Q8WTP9	111 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	C7orf43	Q8WVR3	580 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	RPGR	Q92834	1020 aa	Known RBP	10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	RRAGC	Q9HB90	399 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	MBIP	Q9NS73	344 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	IFT57	Q9NWB7	429 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	CHPF2	Q9P2E5	772 aa		10.13	□□□□□ -0.79
RPL35A-208	ENST00000485439	VEGFA	P15692	232 aa	Predicted RBP	10.12	□□□□□ -0.79
RPL35A-208	ENST00000485439	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
RPL35A-208	ENST00000485439	FSTL1	Q12841	308 aa		10.12	□□□□□ -0.79
RPL35A-208	ENST00000485439	COPS6	Q7L5N1	327 aa		10.12	□□□□□ -0.79
RPL35A-208	ENST00000485439	UTP14A	Q9BVJ6	771 aa	Known RBP	10.12	□□□□□ -0.79
RPL35A-208	ENST00000485439	ZNF853	P0CG23	659 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	HOXA10	P31260	410 aa	Predicted RBP	10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	APLP1	P51693	650 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	GNAI1	P63096	354 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	AIMP1	Q12904	312 aa	Known RBP	10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	DUSP27	Q5VZP5	1158 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	DPY19L2	Q6NUT2	758 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	OLFM4	Q6UX06	510 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	RTKN2	Q8IZC4	609 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	SMC1B	Q8NDV3	1235 aa		10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	DBF4	Q9UBU7	674 aa	Predicted RBP	10.11	□□□□□ -0.79
RPL35A-208	ENST00000485439	COL4A5	P29400	1685 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	TCIRG1	Q13488	830 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	CCDC184	Q52MB2	194 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	CC2D2B	Q6DHV5	1058 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	C3orf67	Q6ZVT6	689 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	NLRP10	Q86W26	655 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	RBM17	Q96I25	401 aa	Known RBP	10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	CRAMP1	Q96RY5	1269 aa		10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.1	□□□□□ -0.79
RPL35A-208	ENST00000485439	ADAMTSL1	Q8N6G6	1762 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	PPEF1	O14829	653 aa	Predicted RBP	10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	IARS	P41252	1262 aa	Known RBP	10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	PLBD2	Q8NHP8	589 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	NLRP3	Q96P20	1036 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	PSMD1	Q99460	953 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	HYPK	Q9NX55	129 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	SPEF2	Q9C093	1822 aa		10.09	□□□□□ -0.79
RPL35A-208	ENST00000485439	ABCC4	O15439	1325 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	SH3TC1	Q8TE82	1336 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	LTBP1	Q14766	1721 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	ANP32C	O43423	234 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	GRIPAP1	Q4V328	841 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	SLC10A5	Q5PT55	438 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	ANKRD13D	Q6ZTN6	518 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	MRS2	Q9HD23	443 aa		10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	TRMT112	Q9UI30	125 aa	Known RBP	10.08	□□□□□ -0.8
RPL35A-208	ENST00000485439	ZNF541	Q9H0D2	1346 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	DUOX1	Q9NRD9	1551 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	POTEC	B2RU33	542 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	DDN	O94850	711 aa	Predicted RBP	10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	GOLGA2	Q08379	1002 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	CCDC27	Q2M243	656 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	SYNE4	Q8N205	404 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	PIAS4	Q8N2W9	510 aa	Predicted RBP	10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	ISCA1	Q9BUE6	129 aa		10.07	□□□□□ -0.8
RPL35A-208	ENST00000485439	COL4A1	P02462	1669 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	IQCA1L	A6NCM1	817 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	HCLS1	P14317	486 aa	Predicted RBP	10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	SLC51A	Q86UW1	340 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	C8orf58	Q8NAV2	365 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	TMX4	Q9H1E5	349 aa	Predicted RBP	10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	ATP6V0A2	Q9Y487	856 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	TRPM7	Q96QT4	1865 aa		10.06	□□□□□ -0.8
RPL35A-208	ENST00000485439	ATP5J2-PTCD1	G3V325	749 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	FZD9	O00144	591 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	ELL2	O00472	640 aa	Predicted RBP	10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	CCDC30	Q5VVM6	783 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	DDX46	Q7L014	1031 aa	Known RBP	10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	WWC1	Q8IX03	1113 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	JDP2	Q8WYK2	163 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	ZNF428	Q96B54	188 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	CHMP4A	Q9BY43	222 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	PSME4	Q14997	1843 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	IL16	Q14005	1332 aa		10.05	□□□□□ -0.8
RPL35A-208	ENST00000485439	TCERG1	O14776	1098 aa	Known RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	TRIM28	Q13263	835 aa	Known RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	GRAP	Q13588	217 aa		10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	NCBP3	Q53F19	620 aa	Known RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	RIC3	Q7Z5B4	369 aa		10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	LDHD	Q86WU2	507 aa		10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	LARGE2	Q8N3Y3	721 aa		10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	GRAPL	Q8TC17	118 aa	Predicted RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	TSR2	Q969E8	191 aa	Known RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	TAF1D	Q9H5J8	278 aa	Predicted RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	PHAX	Q9H814	394 aa	Known RBP	10.04	□□□□□ -0.8
RPL35A-208	ENST00000485439	PPIP5K2	O43314	1243 aa		10.03	□□□□□ -0.8
RPL35A-208	ENST00000485439	BBOX1	O75936	387 aa		10.03	□□□□□ -0.8
RPL35A-208	ENST00000485439	DDX58	O95786	925 aa	Known RBP	10.03	□□□□□ -0.8
RPL35A-208	ENST00000485439	EIF6	P56537	245 aa	Known RBP	10.03	□□□□□ -0.8
RPL35A-208	ENST00000485439	HTRA3	P83110	453 aa		10.03	□□□□□ -0.8
RPL35A-208	ENST00000485439	CHADL	Q6NUI6	762 aa		10.03	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms