RNA–Protein interactions for RNA: ENST00000483778.5

ATG4B-221, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 3

Gene ATG4B, Length 1,103 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-221ENST00000483778 ZNF541Q9H0D2 1346 aa23.64■■□□□ 1.38
ATG4B-221ENST00000483778 LAMB2P55268 1798 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 HOXA10P31260 410 aaPredicted RBP23.63■■□□□ 1.37
ATG4B-221ENST00000483778 AIMP1Q12904 312 aaKnown RBP23.63■■□□□ 1.37
ATG4B-221ENST00000483778 IFFO2Q5TF58 517 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 COPS6Q7L5N1 327 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 RTKN2Q8IZC4 609 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 COL4A5P29400 1685 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 ANKRD36CQ5JPF3 1778 aa23.63■■□□□ 1.37
ATG4B-221ENST00000483778 TCERG1O14776 1098 aaKnown RBP23.62■■□□□ 1.37
ATG4B-221ENST00000483778 LMOD3Q0VAK6 560 aa23.62■■□□□ 1.37
ATG4B-221ENST00000483778 XAGE3Q8WTP9 111 aa23.62■■□□□ 1.37
ATG4B-221ENST00000483778 ZNF428Q96B54 188 aa23.62■■□□□ 1.37
ATG4B-221ENST00000483778 SCN4AP35499 1836 aa23.61■■□□□ 1.37
ATG4B-221ENST00000483778 JMYQ8N9B5 988 aa23.61■■□□□ 1.37
ATG4B-221ENST00000483778 RPGRQ92834 1020 aaKnown RBP23.61■■□□□ 1.37
ATG4B-221ENST00000483778 IBTKQ9P2D0 1353 aaPredicted RBP23.61■■□□□ 1.37
ATG4B-221ENST00000483778 PCNTO95613 3336 aa23.6■■□□□ 1.37
ATG4B-221ENST00000483778 IARSP41252 1262 aaKnown RBP23.6■■□□□ 1.37
ATG4B-221ENST00000483778 WDR43Q15061 677 aaKnown RBP eCLIP23.6■■□□□ 1.37
ATG4B-221ENST00000483778 PRKRIP1Q9H875 184 aaPredicted RBP23.6■■□□□ 1.37
ATG4B-221ENST00000483778 RIC1Q4ADV7 1423 aa23.59■■□□□ 1.37
ATG4B-221ENST00000483778 PPP1R42Q7Z4L9 355 aa23.59■■□□□ 1.37
ATG4B-221ENST00000483778 L3MBTL3Q96JM7 780 aaPredicted RBP23.59■■□□□ 1.37
ATG4B-221ENST00000483778 FZD9O00144 591 aa23.58■■□□□ 1.37
ATG4B-221ENST00000483778 SLC10A5Q5PT55 438 aa23.58■■□□□ 1.37
ATG4B-221ENST00000483778 CHADLQ6NUI6 762 aa23.58■■□□□ 1.37
ATG4B-221ENST00000483778 CRAMP1Q96RY5 1269 aa23.58■■□□□ 1.37
ATG4B-221ENST00000483778 UTP14AQ9BVJ6 771 aaKnown RBP23.58■■□□□ 1.37
ATG4B-221ENST00000483778 TAF1DQ9H5J8 278 aaPredicted RBP23.58■■□□□ 1.37
ATG4B-221ENST00000483778 PARP10Q53GL7 1025 aa23.57■■□□□ 1.36
ATG4B-221ENST00000483778 RBM17Q96I25 401 aaKnown RBP23.57■■□□□ 1.36
ATG4B-221ENST00000483778 PSMD1Q99460 953 aa23.57■■□□□ 1.36
ATG4B-221ENST00000483778 DDX21Q9NR30 783 aaKnown RBP eCLIP23.57■■□□□ 1.36
ATG4B-221ENST00000483778 CHPF2Q9P2E5 772 aa23.57■■□□□ 1.36
ATG4B-221ENST00000483778 HCLS1P14317 486 aaPredicted RBP23.56■■□□□ 1.36
ATG4B-221ENST00000483778 NLRP10Q86W26 655 aa23.56■■□□□ 1.36
ATG4B-221ENST00000483778 TCIRG1Q13488 830 aa23.55■■□□□ 1.36
ATG4B-221ENST00000483778 NLRP3Q96P20 1036 aa23.55■■□□□ 1.36
ATG4B-221ENST00000483778 PPEF1O14829 653 aaPredicted RBP23.54■■□□□ 1.36
ATG4B-221ENST00000483778 APAF1O14727 1248 aa23.53■■□□□ 1.36
ATG4B-221ENST00000483778 CC2D2BQ6DHV5 1058 aa23.53■■□□□ 1.36
ATG4B-221ENST00000483778 MBIPQ9NS73 344 aa23.52■■□□□ 1.36
ATG4B-221ENST00000483778 LTBP1Q14766 1721 aa23.52■■□□□ 1.36
ATG4B-221ENST00000483778 RNF123Q5XPI4 1314 aa23.52■■□□□ 1.36
ATG4B-221ENST00000483778 ADAMTSL1Q8N6G6 1762 aa23.52■■□□□ 1.36
ATG4B-221ENST00000483778 IQCA1LA6NCM1 817 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 ZNF853P0CG23 659 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 CCDC184Q52MB2 194 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 EAPPQ56P03 285 aaPredicted RBP23.51■■□□□ 1.35
ATG4B-221ENST00000483778 HDGFL1Q5TGJ6 251 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 DUSP27Q5VZP5 1158 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 CFAP44Q96MT7 982 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 HACL1Q9UJ83 578 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 ABCC4O15439 1325 aa23.51■■□□□ 1.35
ATG4B-221ENST00000483778 DDX60Q8IY21 1712 aaKnown RBP23.5■■□□□ 1.35
ATG4B-221ENST00000483778 ITGBL1O95965 494 aaPredicted RBP23.5■■□□□ 1.35
ATG4B-221ENST00000483778 EPHX2P34913 555 aa23.5■■□□□ 1.35
ATG4B-221ENST00000483778 LDHDQ86WU2 507 aa23.5■■□□□ 1.35
ATG4B-221ENST00000483778 TRMT112Q9UI30 125 aaKnown RBP23.5■■□□□ 1.35
ATG4B-221ENST00000483778 LARGE2Q8N3Y3 721 aa23.49■■□□□ 1.35
ATG4B-221ENST00000483778 JDP2Q8WYK2 163 aa23.49■■□□□ 1.35
ATG4B-221ENST00000483778 ATP6V0A2Q9Y487 856 aa23.49■■□□□ 1.35
ATG4B-221ENST00000483778 GJA3Q9Y6H8 435 aa23.49■■□□□ 1.35
ATG4B-221ENST00000483778 ATP5J2-PTCD1G3V325 749 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 HSP90AB3PQ58FF7 597 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 COL13A1Q5TAT6 717 aaPredicted RBP23.48■■□□□ 1.35
ATG4B-221ENST00000483778 ANKRD13DQ6ZTN6 518 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 GPC2Q8N158 579 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 PLBD2Q8NHP8 589 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 PASKQ96RG2 1323 aa23.48■■□□□ 1.35
ATG4B-221ENST00000483778 ELL2O00472 640 aaPredicted RBP23.47■■□□□ 1.35
ATG4B-221ENST00000483778 MKRN1Q9UHC7 482 aaKnown RBP23.47■■□□□ 1.35
ATG4B-221ENST00000483778 CLEC11AQ9Y240 323 aa23.47■■□□□ 1.35
ATG4B-221ENST00000483778 COL4A1P02462 1669 aa23.47■■□□□ 1.35
ATG4B-221ENST00000483778 AOC3Q16853 763 aa23.46■■□□□ 1.35
ATG4B-221ENST00000483778 SH3TC1Q8TE82 1336 aa23.46■■□□□ 1.35
ATG4B-221ENST00000483778 ISCA1Q9BUE6 129 aa23.46■■□□□ 1.35
ATG4B-221ENST00000483778 CREBZFQ9NS37 354 aa23.46■■□□□ 1.35
ATG4B-221ENST00000483778 DBF4Q9UBU7 674 aaPredicted RBP23.46■■□□□ 1.35
ATG4B-221ENST00000483778 HOXB7P09629 217 aa23.45■■□□□ 1.34
ATG4B-221ENST00000483778 EPS15P42566 896 aa23.45■■□□□ 1.34
ATG4B-221ENST00000483778 EIF6P56537 245 aaKnown RBP23.45■■□□□ 1.34
ATG4B-221ENST00000483778 MAP1SQ66K74 1059 aaPredicted RBP23.45■■□□□ 1.34
ATG4B-221ENST00000483778 FAM89AQ96GI7 184 aa23.45■■□□□ 1.34
ATG4B-221ENST00000483778 BBOX1O75936 387 aa23.44■■□□□ 1.34
ATG4B-221ENST00000483778 GRIPAP1Q4V328 841 aa23.44■■□□□ 1.34
ATG4B-221ENST00000483778 RTL5Q5HYW3 569 aaPredicted RBP23.44■■□□□ 1.34
ATG4B-221ENST00000483778 SP8Q8IXZ3 490 aa23.44■■□□□ 1.34
ATG4B-221ENST00000483778 C8orf58Q8NAV2 365 aa23.44■■□□□ 1.34
ATG4B-221ENST00000483778 PHAXQ9H814 394 aaKnown RBP23.44■■□□□ 1.34
ATG4B-221ENST00000483778 PPIP5K2O43314 1243 aa23.43■■□□□ 1.34
ATG4B-221ENST00000483778 SCNN1DP51172 638 aa23.43■■□□□ 1.34
ATG4B-221ENST00000483778 HSPA1AP0DMV8 641 aaKnown RBP23.42■■□□□ 1.34
ATG4B-221ENST00000483778 HSPA1BP0DMV9 641 aaKnown RBP23.42■■□□□ 1.34
ATG4B-221ENST00000483778 FMR1Q06787 632 aaKnown RBP eCLIP23.42■■□□□ 1.34
ATG4B-221ENST00000483778 CNTROBQ8N137 903 aa23.42■■□□□ 1.34
ATG4B-221ENST00000483778 RTFDC1Q9BY42 306 aaPredicted RBP23.42■■□□□ 1.34
ATG4B-221ENST00000483778 HYPKQ9NX55 129 aa23.42■■□□□ 1.34
ATG4B-221ENST00000483778 DDX46Q7L014 1031 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms