RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 LRP10Q7Z4F1 713 aa13□□□□□ -0.33
VPS52-217ENST00000478934 EVI5LQ96CN4 794 aa13□□□□□ -0.33
VPS52-217ENST00000478934 CHMP4AQ9BY43 222 aa13□□□□□ -0.33
VPS52-217ENST00000478934 UTYO14607 1347 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 ATF3P18847 181 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 NECTIN1Q15223 517 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 ME3Q16798 604 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 SLFNL1Q499Z3 407 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 LARP1Q6PKG0 1096 aaKnown RBP12.99□□□□□ -0.33
VPS52-217ENST00000478934 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.99□□□□□ -0.33
VPS52-217ENST00000478934 CCDC171Q6TFL3 1326 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 WDR33Q9C0J8 1336 aaKnown RBP12.99□□□□□ -0.33
VPS52-217ENST00000478934 GJB2P29033 226 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 TFCP2Q12800 502 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 CREB3L3Q68CJ9 461 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 ERC1Q8IUD2 1116 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 GPATCH3Q96I76 525 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 FSD1Q9BTV5 496 aa12.99□□□□□ -0.33
VPS52-217ENST00000478934 METTL22Q9BUU2 404 aaPredicted RBP12.99□□□□□ -0.33
VPS52-217ENST00000478934 TMEM94Q12767 1356 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 STX6O43752 255 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 NEXNQ0ZGT2 675 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 SMC3Q9UQE7 1217 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 PHRF1Q9P1Y6 1649 aaKnown RBP12.98□□□□□ -0.33
VPS52-217ENST00000478934 FIBPO43427 364 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 ZSCAN22P10073 491 aaPredicted RBP12.98□□□□□ -0.33
VPS52-217ENST00000478934 IFNL2Q8IZJ0 200 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 RUFY2Q8WXA3 655 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 SEC62Q99442 399 aaKnown RBP12.98□□□□□ -0.33
VPS52-217ENST00000478934 TPCN1Q9ULQ1 816 aa12.98□□□□□ -0.33
VPS52-217ENST00000478934 TRPM3Q9HCF6 1732 aaPredicted RBP12.98□□□□□ -0.33
VPS52-217ENST00000478934 FAM173BQ6P4H8 233 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 CCDC129Q6ZRS4 1044 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 TTC5Q8N0Z6 440 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 ZSWIM6Q9HCJ5 1215 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 DBNLQ9UJU6 430 aaKnown RBP12.97□□□□□ -0.33
VPS52-217ENST00000478934 ZNF142P52746 1687 aaPredicted RBP12.97□□□□□ -0.33
VPS52-217ENST00000478934 SLC27A2O14975 620 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 CYP46A1Q9Y6A2 500 aa12.97□□□□□ -0.33
VPS52-217ENST00000478934 MBD3O95983 291 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 DNM1Q05193 864 aaKnown RBP12.96□□□□□ -0.33
VPS52-217ENST00000478934 PTPN12Q05209 780 aaKnown RBP12.96□□□□□ -0.33
VPS52-217ENST00000478934 MAP4K1Q92918 833 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 C5P01031 1676 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 A0A087WZG4 1122 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 EPB41L2O43491 1005 aaKnown RBP12.96□□□□□ -0.33
VPS52-217ENST00000478934 SNRPA1P09661 255 aaKnown RBP12.96□□□□□ -0.33
VPS52-217ENST00000478934 RFX5P48382 616 aaPredicted RBP12.96□□□□□ -0.33
VPS52-217ENST00000478934 HSPA2P54652 639 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 CABP4P57796 275 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 STK3Q13188 491 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 FERMT3Q86UX7 667 aa12.96□□□□□ -0.33
VPS52-217ENST00000478934 OVOS2A0A0G2JMS6 1433 aa12.96□□□□□ -0.34
VPS52-217ENST00000478934 VPS37CA5D8V6 355 aaPredicted RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 F13A1P00488 732 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 VPS53Q5VIR6 699 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 TTLL7Q6ZT98 887 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 PDLIM2Q96JY6 352 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 DNAJC2Q99543 621 aaKnown RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 DBNDD2Q9BQY9 259 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 CHMP3Q9Y3E7 222 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 R3HCC1Q9Y3T6 440 aaKnown RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 COL15A1P39059 1388 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 NBPF26B4DH59 902 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 NBPF14Q5TI25 921 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 NBPF10Q6P3W6 841 aaKnown RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 NBPF15Q8N660 670 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 ZNF830Q96NB3 372 aaPredicted RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 MTMR6Q9Y217 621 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 ADAMTSL3P82987 1691 aa12.95□□□□□ -0.34
VPS52-217ENST00000478934 SIPA1L3O60292 1781 aaPredicted RBP12.95□□□□□ -0.34
VPS52-217ENST00000478934 TSPY26PQ9H489 355 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.94□□□□□ -0.34
VPS52-217ENST00000478934 CRYBG1Q9Y4K1 1723 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 MST1RQ04912 1400 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 ZKSCAN1P17029 563 aaPredicted RBP12.94□□□□□ -0.34
VPS52-217ENST00000478934 RBM10P98175 930 aaKnown RBP12.94□□□□□ -0.34
VPS52-217ENST00000478934 TNNI3KQ59H18 835 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 DDX46Q7L014 1031 aaKnown RBP12.94□□□□□ -0.34
VPS52-217ENST00000478934 KCNB2Q92953 911 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 DCAF5Q96JK2 942 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 FPGT-TNNI3KV9GXZ4 949 aa12.94□□□□□ -0.34
VPS52-217ENST00000478934 A1BGP04217 495 aa12.93□□□□□ -0.34
VPS52-217ENST00000478934 HSP90AA2PQ14568 343 aaPredicted RBP12.93□□□□□ -0.34
VPS52-217ENST00000478934 LMBR1LQ6UX01 489 aa12.93□□□□□ -0.34
VPS52-217ENST00000478934 FMNL2Q96PY5 1086 aa12.93□□□□□ -0.34
VPS52-217ENST00000478934 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
VPS52-217ENST00000478934 PTMAP06454 111 aaKnown RBP12.92□□□□□ -0.34
VPS52-217ENST00000478934 ZNF594Q96JF6 807 aaPredicted RBP12.92□□□□□ -0.34
VPS52-217ENST00000478934 LRRC2Q9BYS8 371 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 NOL7Q9UMY1 257 aaKnown RBP12.92□□□□□ -0.34
VPS52-217ENST00000478934 HDAC5Q9UQL6 1122 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 CAMTA1Q9Y6Y1 1673 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 A0A0G2JLW4 131 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 PPFIA3O75145 1194 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 TAF5LO75529 589 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 TIMM10P62072 90 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 TOB2Q14106 344 aaPredicted RBP12.92□□□□□ -0.34
VPS52-217ENST00000478934 CDC37L1Q7L3B6 337 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 ZBTB3Q9H5J0 574 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms