RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	TRMT2A	Q8IZ69	625 aa	Known RBP	13.17	□□□□□ -0.3
HDAC6-222	ENST00000478095	ATP5J2-PTCD1	G3V325	749 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	DDX58	O95786	925 aa	Known RBP	13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	FLII	Q13045	1269 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	GPR162	Q16538	588 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	HSP90AB3P	Q58FF7	597 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	TPTE2	Q6XPS3	522 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	MYD88	Q99836	296 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	ABCC12	Q96J65	1359 aa		13.16	□□□□□ -0.3
HDAC6-222	ENST00000478095	PI4KAP2	A4QPH2	592 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	NTSR2	O95665	410 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	YBX3	P16989	372 aa	Known RBP eCLIP	13.15	□□□□□ -0.3	9e-6	■■■□□ 18.1
HDAC6-222	ENST00000478095	ERFE	Q4G0M1	354 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	PARP10	Q53GL7	1025 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	NLRP10	Q86W26	655 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	C2CD5	Q86YS7	1000 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	PI4KAP1	Q8N8J0	262 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	BRIP1	Q9BX63	1249 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	BCL2L13	Q9BXK5	485 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	MAP3K2	Q9Y2U5	619 aa		13.15	□□□□□ -0.3
HDAC6-222	ENST00000478095	ZBED9	Q6R2W3	1325 aa		13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	KCNA3	P22001	575 aa		13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	FKBP5	Q13451	457 aa	Predicted RBP	13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	KSR2	Q6VAB6	950 aa		13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	UTP14A	Q9BVJ6	771 aa	Known RBP	13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	NYX	Q9GZU5	481 aa		13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	ADCY9	O60503	1353 aa		13.14	□□□□□ -0.31
HDAC6-222	ENST00000478095	NRXN2	Q9P2S2	1712 aa		13.13	□□□□□ -0.31
HDAC6-222	ENST00000478095	PPP1R42	Q7Z4L9	355 aa		13.13	□□□□□ -0.31
HDAC6-222	ENST00000478095	ISCA1	Q9BUE6	129 aa		13.13	□□□□□ -0.31
HDAC6-222	ENST00000478095	BCS1L	Q9Y276	419 aa		13.13	□□□□□ -0.31
HDAC6-222	ENST00000478095	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095		H0YIN7	160 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	PDE6B	P35913	854 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	RTL5	Q5HYW3	569 aa	Predicted RBP	13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	CHADL	Q6NUI6	762 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	SYNE4	Q8N205	404 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	SSH1	Q8WYL5	1049 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.12	□□□□□ -0.31	2e-6	■□□□□ 8.5
HDAC6-222	ENST00000478095	METTL22	Q9BUU2	404 aa	Predicted RBP	13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	PIM2	Q9P1W9	311 aa		13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095	TRMT112	Q9UI30	125 aa	Known RBP	13.12	□□□□□ -0.31
HDAC6-222	ENST00000478095		F6X3S4	739 aa		13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	C3orf67	Q6ZVT6	689 aa		13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	MRPL50	Q8N5N7	158 aa	Known RBP	13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	FAM89A	Q96GI7	184 aa		13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	SMC4	Q9NTJ3	1288 aa		13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	GOLGB1	Q14789	3259 aa	Known RBP	13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	AFDN	P55196	1824 aa	Known RBP	13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	SH3TC1	Q8TE82	1336 aa		13.11	□□□□□ -0.31
HDAC6-222	ENST00000478095	KIAA1551	Q9HCM1	1747 aa		13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	IGKV5-2	P06315	115 aa		13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	SRGN	P10124	158 aa		13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	HCLS1	P14317	486 aa	Predicted RBP	13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	CWF19L2	Q2TBE0	894 aa	Known RBP	13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	DALRD3	Q5D0E6	543 aa	Known RBP	13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	DNAAF4	Q8WXU2	420 aa		13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	JARID2	Q92833	1246 aa	Predicted RBP	13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	KIF13B	Q9NQT8	1826 aa		13.1	□□□□□ -0.31
HDAC6-222	ENST00000478095	NEXN	Q0ZGT2	675 aa		13.09	□□□□□ -0.31
HDAC6-222	ENST00000478095	TRIM28	Q13263	835 aa	Known RBP	13.09	□□□□□ -0.31
HDAC6-222	ENST00000478095	YTHDC1	Q96MU7	727 aa	Known RBP	13.09	□□□□□ -0.31
HDAC6-222	ENST00000478095	CWC25	Q9NXE8	425 aa	Predicted RBP	13.09	□□□□□ -0.31
HDAC6-222	ENST00000478095	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	KLRG2	A4D1S0	409 aa	Predicted RBP	13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	NEURL1B	A8MQ27	555 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	CT47B1	P0C2W7	299 aa	Predicted RBP	13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	ALDH1L2	Q3SY69	923 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	TTLL6	Q8N841	843 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	CCDC191	Q8NCU4	936 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	MASTL	Q96GX5	879 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	NUP98	P52948	1817 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	RNF123	Q5XPI4	1314 aa		13.08	□□□□□ -0.32
HDAC6-222	ENST00000478095	ARFGEF2	Q9Y6D5	1785 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	GRIN3B	O60391	1043 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	NPR1	P16066	1061 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	RARS	P54136	660 aa	Known RBP	13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	CRY2	Q49AN0	593 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	STYK1	Q6J9G0	422 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	SLC4A10	Q6U841	1118 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	RPGR	Q92834	1020 aa	Known RBP	13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	NLRP3	Q96P20	1036 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	PDZRN3	Q9UPQ7	1066 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	UTRN	P46939	3433 aa		13.07	□□□□□ -0.32
HDAC6-222	ENST00000478095	RIC1	Q4ADV7	1423 aa		13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	ANKRD31	Q8N7Z5	1873 aa		13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	IRS4	O14654	1257 aa	Predicted RBP	13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	SLC10A5	Q5PT55	438 aa		13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	BEND3	Q5T5X7	828 aa		13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	PRPF40B	Q6NWY9	871 aa	Known RBP	13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	LINS1	Q8NG48	757 aa		13.06	□□□□□ -0.32
HDAC6-222	ENST00000478095	COL11A2	P13942	1736 aa	Predicted RBP	13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	HAX1	O00165	279 aa		13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	C21orf2	O43822	256 aa		13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	PCCA	P05165	728 aa	Predicted RBP	13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	GCKR	Q14397	625 aa		13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	ARHGAP27	Q6ZUM4	889 aa		13.05	□□□□□ -0.32
HDAC6-222	ENST00000478095	CNKSR1	Q969H4	720 aa		13.05	□□□□□ -0.32

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