RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 FAM196BA6NMK8 535 aa8.74□□□□□ -1.01
UBR3-209ENST00000477461 NEUROD1Q13562 356 aa8.74□□□□□ -1.01
UBR3-209ENST00000477461 CD163Q86VB7 1156 aa8.74□□□□□ -1.01
UBR3-209ENST00000477461 NOP53Q9NZM5 478 aaKnown RBP8.74□□□□□ -1.01
UBR3-209ENST00000477461 KLK14Q9P0G3 267 aa8.74□□□□□ -1.01
UBR3-209ENST00000477461 M0R082 166 aa8.73□□□□□ -1.01
UBR3-209ENST00000477461 ALYREFQ86V81 257 aaKnown RBP8.73□□□□□ -1.01
UBR3-209ENST00000477461 ZNF417Q8TAU3 575 aa8.73□□□□□ -1.01
UBR3-209ENST00000477461 ARXQ96QS3 562 aa8.73□□□□□ -1.01
UBR3-209ENST00000477461 ZNF587Q96SQ5 575 aaPredicted RBP8.73□□□□□ -1.01
UBR3-209ENST00000477461 STARD13Q9Y3M8 1113 aa8.73□□□□□ -1.01
UBR3-209ENST00000477461 LOC100996750A0A140TA64 210 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 ADARB2-AS1A8MUL3 147 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 FURINP09958 794 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 IGFBP4P22692 258 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 ADH7P40394 386 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 CHRNA4P43681 627 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 BAG6P46379 1132 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 MDFIQ99750 246 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 KRTAP4-6Q9BYQ5 205 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 BCS1LQ9Y276 419 aa8.72□□□□□ -1.01
UBR3-209ENST00000477461 FAM229AH3BQW9 127 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 ALBP02768 609 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 KCNQ4P56696 695 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 RTN1Q16799 776 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 FAM200AQ8TCP9 573 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 TNFRSF25Q93038 417 aa8.71□□□□□ -1.02
UBR3-209ENST00000477461 MICALL1Q8N3F8 863 aa8.7□□□□□ -1.02
UBR3-209ENST00000477461 VTI1AQ96AJ9 217 aa8.7□□□□□ -1.02
UBR3-209ENST00000477461 UBE2OQ9C0C9 1292 aaKnown RBP8.7□□□□□ -1.02
UBR3-209ENST00000477461 ADAM23O75077 832 aa8.69□□□□□ -1.02
UBR3-209ENST00000477461 DGKZQ13574 1117 aa8.69□□□□□ -1.02
UBR3-209ENST00000477461 HIF1AQ16665 826 aa8.69□□□□□ -1.02
UBR3-209ENST00000477461 PRIMPOLQ96LW4 560 aa8.69□□□□□ -1.02
UBR3-209ENST00000477461 GSX2Q9BZM3 304 aa8.69□□□□□ -1.02
UBR3-209ENST00000477461 KRT25Q7Z3Z0 450 aa8.68□□□□□ -1.02
UBR3-209ENST00000477461 NUDT8Q8WV74 236 aa8.68□□□□□ -1.02
UBR3-209ENST00000477461 PNMA5Q96PV4 448 aa8.68□□□□□ -1.02
UBR3-209ENST00000477461 DMGDHQ9UI17 866 aaKnown RBP8.68□□□□□ -1.02
UBR3-209ENST00000477461 NOVA2Q9UNW9 492 aaKnown RBP8.68□□□□□ -1.02
UBR3-209ENST00000477461 TGFBR3LH3BV60 316 aa8.67□□□□□ -1.02
UBR3-209ENST00000477461 NFKB1P19838 968 aa8.67□□□□□ -1.02
UBR3-209ENST00000477461 WEE1P30291 646 aa8.67□□□□□ -1.02
UBR3-209ENST00000477461 IDH3AP50213 366 aa8.67□□□□□ -1.02
UBR3-209ENST00000477461 COL9A3Q14050 684 aaPredicted RBP8.67□□□□□ -1.02
UBR3-209ENST00000477461 QTRT2Q9H974 415 aaKnown RBP8.67□□□□□ -1.02
UBR3-209ENST00000477461 USP20Q9Y2K6 914 aa8.67□□□□□ -1.02
UBR3-209ENST00000477461 GRNP28799 593 aaKnown RBP8.66□□□□□ -1.02
UBR3-209ENST00000477461 CCINQ13939 588 aa8.66□□□□□ -1.02
UBR3-209ENST00000477461 DOC2BQ14184 412 aa8.66□□□□□ -1.02
UBR3-209ENST00000477461 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.66□□□□□ -1.02
UBR3-209ENST00000477461 K7ELQ4 463 aaPredicted RBP8.65□□□□□ -1.02
UBR3-209ENST00000477461 PRMT3O60678 531 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 SPATA31C1P0DKV0 1188 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 TRIM28Q13263 835 aaKnown RBP8.65□□□□□ -1.02
UBR3-209ENST00000477461 PRRT3Q5FWE3 981 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 TRAPPC3LQ5T215 181 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 IER5Q5VY09 327 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 C20orf204Q6ZNR8 217 aa8.65□□□□□ -1.02
UBR3-209ENST00000477461 DNAJB12Q9NXW2 375 aaKnown RBP8.65□□□□□ -1.02
UBR3-209ENST00000477461 LILRB5O75023 590 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 MICAL2O94851 1124 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 TARSP26639 723 aaKnown RBP8.64□□□□□ -1.03
UBR3-209ENST00000477461 INPP5BP32019 993 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 GRIK4Q16099 956 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 C11orf91Q3C1V1 193 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 JPH1Q9HDC5 661 aaPredicted RBP8.64□□□□□ -1.03
UBR3-209ENST00000477461 LRFN2Q9ULH4 789 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 SLC6A14Q9UN76 642 aa8.64□□□□□ -1.03
UBR3-209ENST00000477461 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.63□□□□□ -1.03
UBR3-209ENST00000477461 SPDYE3A6NKU9 549 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 FOXO3O43524 673 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 SASH3O75995 380 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 NID1P14543 1247 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 GATA4P43694 442 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 IFT43Q96FT9 208 aa8.63□□□□□ -1.03
UBR3-209ENST00000477461 MLLT1Q03111 559 aaPredicted RBP8.62□□□□□ -1.03
UBR3-209ENST00000477461 FKBP5Q13451 457 aaPredicted RBP8.62□□□□□ -1.03
UBR3-209ENST00000477461 PSAPL1Q6NUJ1 521 aa8.62□□□□□ -1.03
UBR3-209ENST00000477461 OPLAHO14841 1288 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 APBA3O96018 575 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 CPB1P15086 417 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 EPB42P16452 691 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 STK32AQ8WU08 396 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 PRDM6Q9NQX0 595 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 ZFATQ9P243 1243 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 ZMIZ1Q9ULJ6 1067 aa8.61□□□□□ -1.03
UBR3-209ENST00000477461 ARSDP51689 593 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 COX20Q5RI15 118 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 FAM35AQ86V20 835 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 DMRTC2Q8IXT2 367 aaPredicted RBP8.6□□□□□ -1.03
UBR3-209ENST00000477461 RGL4Q8IZJ4 473 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 CMTR1Q8N1G2 835 aaKnown RBP8.6□□□□□ -1.03
UBR3-209ENST00000477461 ZMYND15Q9H091 742 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.6□□□□□ -1.03
UBR3-209ENST00000477461 NAGPAQ9UK23 515 aa8.6□□□□□ -1.03
UBR3-209ENST00000477461 ZBTB42B2RXF5 422 aa8.59□□□□□ -1.03
UBR3-209ENST00000477461 RGS9O75916 674 aaPredicted RBP8.59□□□□□ -1.03
UBR3-209ENST00000477461 CAPN12Q6ZSI9 719 aa8.59□□□□□ -1.03
UBR3-209ENST00000477461 HFE2Q6ZVN8 426 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms