RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-215ENST00000474539 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.41□□□□□ -1.546e-15■■■■■ 65.2
CCNL1-215ENST00000474539 ATP7BP35670 1465 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 CASTP20810 708 aaKnown RBP5.41□□□□□ -1.54
CCNL1-215ENST00000474539 AMPD3Q01432 767 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 BLOC1S2Q6QNY1 142 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 CFAP45Q9UL16 551 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 USP48Q86UV5 1035 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 LINS1Q8NG48 757 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 EVI5LQ96CN4 794 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 SCLT1Q96NL6 688 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 ABCF2Q9UG63 623 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 GGA1Q9UJY5 639 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 OVOS2A0A0G2JMS6 1433 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 OVOS2A0A0J9YW53 1432 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 OVOS2Q6IE36 1432 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 SH3TC1Q8TE82 1336 aa5.41□□□□□ -1.54
CCNL1-215ENST00000474539 GNPATO15228 680 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 IDH1O75874 414 aaKnown RBP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 FKBP4Q02790 459 aaKnown RBP eCLIP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 CCDC96Q2M329 555 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 CCDC191Q8NCU4 936 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 FERMT1Q9BQL6 677 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 ARHGEF10LQ9HCE6 1279 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 SH2B1Q9NRF2 756 aaPredicted RBP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 ZNHIT6Q9NWK9 470 aaKnown RBP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 SPDYE4A6NLX3 237 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 ATP2B4P23634 1241 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 HOXC9P31274 260 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 RRP12Q5JTH9 1297 aaKnown RBP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 SAMD1Q6SPF0 538 aaPredicted RBP5.4□□□□□ -1.54
CCNL1-215ENST00000474539 CRBNQ96SW2 442 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 IVNS1ABPQ9Y6Y0 642 aa5.4□□□□□ -1.54
CCNL1-215ENST00000474539 TTC37Q6PGP7 1564 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 TSG101Q99816 390 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 ACBD3Q9H3P7 528 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 RTL9Q8NET4 1388 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 PARD3Q8TEW0 1356 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 TICAM2Q86XR7 235 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 HACE1Q8IYU2 909 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 PLEKHG2Q9H7P9 1386 aa5.4□□□□□ -1.55
CCNL1-215ENST00000474539 FLIIQ13045 1269 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 CHRNA2Q15822 529 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 RTKN2Q8IZC4 609 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 SLC16A10Q8TF71 515 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 KAT14Q9H8E8 782 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 CCDC171Q6TFL3 1326 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 RNMTO43148 476 aaKnown RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 CBFA2T2O43439 604 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 PDE8AO60658 829 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 KINO60870 393 aaKnown RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 MAP4K4O95819 1239 aaPredicted RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 PPP2R5BQ15173 497 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 PLBD2Q8NHP8 589 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 PDCL3Q9H2J4 239 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 NOB1Q9ULX3 412 aaKnown RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 ZNF213O14771 459 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 NBPF7P0C2Y1 421 aaPredicted RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 CCNA1P78396 465 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 STK38Q15208 465 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 NUP133Q8WUM0 1156 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 DDX21Q9NR30 783 aaKnown RBP eCLIP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 ORC3Q9UBD5 711 aaPredicted RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 CSADQ9Y600 493 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 ABCA9Q8IUA7 1624 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 ATP2B3Q16720 1220 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 DPP8Q6V1X1 898 aaPredicted RBP5.39□□□□□ -1.55
CCNL1-215ENST00000474539 LARGE2Q8N3Y3 721 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 ESR2Q92731 530 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 MYO3BQ8WXR4 1341 aa5.39□□□□□ -1.55
CCNL1-215ENST00000474539 SEMA3EO15041 775 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CCDC172P0C7W6 258 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 SUPT20HL1Q3ZLR7 823 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 HSP90AB2PQ58FF8 381 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ODR4Q5SWX8 454 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 WDR78Q5VTH9 848 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CCDC174Q6PII3 467 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 MROH5Q6ZUA9 1318 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 RAD50Q92878 1312 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 AATKQ6ZMQ8 1374 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ADCY10Q96PN6 1610 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 NEBLO76041 1014 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 LDHBP07195 334 aaKnown RBP5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CDC37L1Q7L3B6 337 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 DCPSQ96C86 337 aaKnown RBP5.38□□□□□ -1.55
CCNL1-215ENST00000474539 LZTS2Q9BRK4 669 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ECHDC1Q9NTX5 307 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 WDR33Q9C0J8 1336 aaKnown RBP5.38□□□□□ -1.55
CCNL1-215ENST00000474539 NCAPD2Q15021 1401 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ERLIN2O94905 339 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CALML3P27482 149 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 NAA16Q6N069 864 aaPredicted RBP5.38□□□□□ -1.55
CCNL1-215ENST00000474539 KANK3Q6NY19 840 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ARMC9Q7Z3E5 817 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 HOOK3Q86VS8 718 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CCDC82Q8N4S0 544 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 RTEL1Q9NZ71 1219 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 CPS1P31327 1500 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 IQCA1LA6NCM1 817 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 ATP5J2-PTCD1G3V325 749 aa5.38□□□□□ -1.55
CCNL1-215ENST00000474539 COPB2P35606 906 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms