RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 RASSF8Q8NHQ8 419 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 TYRO3Q06418 890 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 ME3Q16798 604 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 COPS6Q7L5N1 327 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 RALYLQ86SE5 291 aaKnown RBP12.6□□□□□ -0.39
CHD3-208ENST00000470531 MYRIPQ8NFW9 859 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 TLR7Q9NYK1 1049 aaKnown RBP12.6□□□□□ -0.39
CHD3-208ENST00000470531 MYOM2P54296 1465 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 A0A087WZG4 1122 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 TIMM10P62072 90 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 POLR3GO15318 223 aaPredicted RBP12.59□□□□□ -0.39
CHD3-208ENST00000470531 ZFYVE16Q7Z3T8 1539 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 SLC4A8Q2Y0W8 1093 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 CREB3L3Q68CJ9 461 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 DDX17Q92841 729 aaKnown RBP12.59□□□□□ -0.39
CHD3-208ENST00000470531 BICC1Q9H694 974 aaKnown RBP12.59□□□□□ -0.39
CHD3-208ENST00000470531 TULP4Q9NRJ4 1543 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 MARCKSP29966 332 aaPredicted RBP12.59□□□□□ -0.39
CHD3-208ENST00000470531 APOBRQ0VD83 1088 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 Q6ZUG5 572 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 FSIP1Q8NA03 581 aa12.59□□□□□ -0.39
CHD3-208ENST00000470531 KIF1BO60333 1816 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 ADGRB2O60241 1585 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 SGSM2O43147 1006 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 SERPINC1P01008 464 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 MCM5P33992 734 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 XAGE3Q8WTP9 111 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 BCL2L12Q9HB09 334 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 TET3O43151 1660 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 MTERF4Q7Z6M4 381 aaKnown RBP12.58□□□□□ -0.4
CHD3-208ENST00000470531 MNS1Q8NEH6 495 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 PRR36Q9H6K5 1346 aa12.58□□□□□ -0.4
CHD3-208ENST00000470531 YEATS2Q9ULM3 1422 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 IDH1O75874 414 aaKnown RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 LETM1O95202 739 aaPredicted RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 ZSCAN20P17040 1043 aaPredicted RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 CCAR1Q8IX12 1150 aaKnown RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 CPLX3Q8WVH0 158 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 PPP6R1Q9UPN7 881 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 METP08581 1390 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 POGZQ7Z3K3 1410 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 ZNF853P0CG23 659 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 TPM4P67936 248 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 NFATC2IPQ8NCF5 419 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 LRRC7Q96NW7 1537 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 DBF4Q9UBU7 674 aaPredicted RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 TPCN1Q9ULQ1 816 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 SETD1BQ9UPS6 1966 aaKnown RBP12.57□□□□□ -0.4
CHD3-208ENST00000470531 MED14O60244 1454 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 GPTP24298 496 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 KLHL10Q6JEL2 608 aa12.57□□□□□ -0.4
CHD3-208ENST00000470531 A0A1B0GVL5 298 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 LMOD1P29536 600 aaPredicted RBP12.56□□□□□ -0.4
CHD3-208ENST00000470531 ARID5BQ14865 1188 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 PTPN14Q15678 1187 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 NBPF6Q5VWK0 638 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 TTC6Q86TZ1 520 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 CNPY4Q8N129 248 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 NBPF4Q96M43 638 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 A0A0D9SFI3 127 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 TRDNQ13061 729 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 HDAC5Q9UQL6 1122 aa12.56□□□□□ -0.4
CHD3-208ENST00000470531 TMC6Q7Z403 805 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 AOPEPQ8N6M6 819 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 ZNF594Q96JF6 807 aaPredicted RBP12.55□□□□□ -0.4
CHD3-208ENST00000470531 NEK1Q96PY6 1258 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 NR1I2O75469 434 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 KCNA6P17658 529 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 LTKP29376 864 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 CFAP100Q494V2 611 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 NUP133Q8WUM0 1156 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 PTCH1Q13635 1447 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 SKILP12757 684 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 HSPA4P34932 840 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 DMTNQ08495 405 aa12.55□□□□□ -0.4
CHD3-208ENST00000470531 EAF2Q96CJ1 260 aaPredicted RBP12.55□□□□□ -0.4
CHD3-208ENST00000470531 ZSCAN31Q96LW9 406 aaPredicted RBP12.55□□□□□ -0.4
CHD3-208ENST00000470531 TFCP2Q12800 502 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 EVI5LQ96CN4 794 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 IQSEC3Q9UPP2 1182 aaPredicted RBP12.54□□□□□ -0.4
CHD3-208ENST00000470531 LMBR1LQ6UX01 489 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 FAM200AQ8TCP9 573 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 SUCLG2Q96I99 432 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 RNF216Q9NWF9 866 aaPredicted RBP12.54□□□□□ -0.4
CHD3-208ENST00000470531 PHF8Q9UPP1 1060 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 URI1O94763 535 aaPredicted RBP12.54□□□□□ -0.4
CHD3-208ENST00000470531 HOXC9P31274 260 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 SPECC1Q5M775 1068 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 ERC1Q8IUD2 1116 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 DBNDD2Q9BQY9 259 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 CBX8Q9HC52 389 aa12.54□□□□□ -0.4
CHD3-208ENST00000470531 COL3A1P02461 1466 aaPredicted RBP12.54□□□□□ -0.4
CHD3-208ENST00000470531 GRM8O00222 908 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 CABP4P57796 275 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 SCAND2PQ9GZW5 306 aaPredicted RBP12.53□□□□□ -0.4
CHD3-208ENST00000470531 TAF6LQ9Y6J9 622 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 KIAA1210Q9ULL0 1709 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 AP5Z1O43299 807 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 MICU3Q86XE3 530 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms