RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 J3QL48 77 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 ANP32CO43423 234 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 ABTB2Q8N961 1025 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 C1orf115Q9H7X2 142 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 OVOS2A0A0J9YW53 1432 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 OVOS2Q6IE36 1432 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 SPATA31A3Q5VYP0 1347 aa6.4□□□□□ -1.38
SF3B1-208ENST00000470268 TRPM3Q9HCF6 1732 aaPredicted RBP6.4□□□□□ -1.38
SF3B1-208ENST00000470268 SNRPBP14678 240 aaKnown RBP6.4□□□□□ -1.38
SF3B1-208ENST00000470268 TNNT2P45379 298 aaPredicted RBP6.4□□□□□ -1.38
SF3B1-208ENST00000470268 CTDSPL2Q05D32 466 aa6.4□□□□□ -1.38
SF3B1-208ENST00000470268 CCDC184Q52MB2 194 aa6.4□□□□□ -1.38
SF3B1-208ENST00000470268 RC3H1Q5TC82 1133 aaKnown RBP6.4□□□□□ -1.38
SF3B1-208ENST00000470268 DESI1Q6ICB0 168 aa6.4□□□□□ -1.38
SF3B1-208ENST00000470268 PIK3C2AO00443 1686 aa6.4□□□□□ -1.38
SF3B1-208ENST00000470268 SBNO1A3KN83 1393 aa6.4□□□□□ -1.39
SF3B1-208ENST00000470268 BRD4O60885 1362 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-208ENST00000470268 NSD2O96028 1365 aa6.4□□□□□ -1.39
SF3B1-208ENST00000470268 USP31Q70CQ4 1352 aa6.4□□□□□ -1.39
SF3B1-208ENST00000470268 MORC1Q86VD1 984 aa6.4□□□□□ -1.39
SF3B1-208ENST00000470268 PRR7Q8TB68 274 aa6.4□□□□□ -1.39
SF3B1-208ENST00000470268 SYMPKQ92797 1274 aaKnown RBP6.4□□□□□ -1.39
SF3B1-208ENST00000470268 GJD4Q96KN9 370 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-208ENST00000470268 TNS3Q68CZ2 1445 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 NHSL1Q5SYE7 1610 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 PPP2R1AP30153 589 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 RALBP1Q15311 655 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 SLC16A10Q8TF71 515 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 HPS1Q92902 700 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 COG3Q96JB2 828 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 GDPD2Q9HCC8 539 aa6.39□□□□□ -1.39
SF3B1-208ENST00000470268 AHDC1Q5TGY3 1603 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-208ENST00000470268 FAM181BA6NEQ2 426 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 WWC1Q8IX03 1113 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 CCDC24Q8N4L8 307 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 MARF1Q9Y4F3 1742 aaKnown RBP6.38□□□□□ -1.39
SF3B1-208ENST00000470268 USP19O94966 1318 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 MYBBP1AQ9BQG0 1328 aaKnown RBP6.38□□□□□ -1.39
SF3B1-208ENST00000470268 ALS2Q96Q42 1657 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 RRS1Q15050 365 aaKnown RBP6.38□□□□□ -1.39
SF3B1-208ENST00000470268 NDUFB9Q9Y6M9 179 aa6.38□□□□□ -1.39
SF3B1-208ENST00000470268 MED1Q15648 1581 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-208ENST00000470268 GCP02774 474 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 JUNDP17535 347 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 NLRP13Q86W25 1043 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 NPAS3Q8IXF0 933 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 TRIM34Q9BYJ4 488 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 POLKQ9UBT6 870 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 TBC1D2BQ9UPU7 963 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 EMILIN1Q9Y6C2 1016 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 KIF20BQ96Q89 1820 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 COL16A1Q07092 1604 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-208ENST00000470268 HSPA1LP34931 641 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 MTHFSP49914 203 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 HOMEZQ8IX15 550 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 TSC1Q92574 1164 aa6.37□□□□□ -1.39
SF3B1-208ENST00000470268 LRRC59Q96AG4 307 aaKnown RBP6.37□□□□□ -1.39
SF3B1-208ENST00000470268 HMX1Q9NP08 348 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-208ENST00000470268 ZNF330Q9Y3S2 320 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-208ENST00000470268 ARHGEF10O15013 1369 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 AATKQ6ZMQ8 1374 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 PNPLA6Q8IY17 1366 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 SKOR1P84550 965 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 LRRN4Q8WUT4 740 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 SLIT3O75094 1523 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 NFAT5O94916 1531 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 ANKRD26Q9UPS8 1709 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 MAP3K19Q56UN5 1328 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 USP54Q70EL1 1684 aa6.36□□□□□ -1.39
SF3B1-208ENST00000470268 LYPD8Q6UX82 237 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 SMG6Q86US8 1419 aaKnown RBP6.35□□□□□ -1.39
SF3B1-208ENST00000470268 PHLPP1O60346 1717 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 CCER2I3L3R5 266 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 PPM1GO15355 546 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-208ENST00000470268 ALDH1A1P00352 501 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 ABL2P42684 1182 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 ZC3H6P61129 1189 aaKnown RBP6.35□□□□□ -1.39
SF3B1-208ENST00000470268 ARHGEF25Q86VW2 580 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 MRS2Q9HD23 443 aa6.35□□□□□ -1.39
SF3B1-208ENST00000470268 GPR37L1O60883 481 aa6.34□□□□□ -1.39
SF3B1-208ENST00000470268 HSP90AB2PQ58FF8 381 aa6.34□□□□□ -1.39
SF3B1-208ENST00000470268 KCNH5Q8NCM2 988 aa6.34□□□□□ -1.39
SF3B1-208ENST00000470268 NXF1Q9UBU9 619 aaKnown RBP6.34□□□□□ -1.39
SF3B1-208ENST00000470268 CRYBG1Q9Y4K1 1723 aa6.34□□□□□ -1.39
SF3B1-208ENST00000470268 COL3A1P02461 1466 aaPredicted RBP6.34□□□□□ -1.4
SF3B1-208ENST00000470268 KIAA0232Q92628 1395 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 PEAK1Q9H792 1746 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 PHRF1Q9P1Y6 1649 aaKnown RBP6.33□□□□□ -1.4
SF3B1-208ENST00000470268 SIAH2O43255 324 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 HOXC9P31274 260 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 IRF5Q13568 498 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 CHRNA2Q15822 529 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 WASHC4Q2M389 1173 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 CCDC82Q8N4S0 544 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 PNISRQ8TF01 805 aaKnown RBP6.33□□□□□ -1.4
SF3B1-208ENST00000470268 NUDT12Q9BQG2 462 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 WASF2Q9Y6W5 498 aa6.33□□□□□ -1.4
SF3B1-208ENST00000470268 COL22A1Q8NFW1 1626 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-208ENST00000470268 CPDO75976 1380 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 INSRP06213 1382 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms