RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ALDH1B1P30837 517 aa15.76■□□□□ 0.11
SQSTM1-206ENST00000466342 NPM2Q86SE8 214 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-206ENST00000466342 TTC5Q8N0Z6 440 aa15.76■□□□□ 0.11
SQSTM1-206ENST00000466342 DLG5Q8TDM6 1919 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 SCNN1DP51172 638 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 SOX10P56693 466 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 CIAPIN1Q6FI81 312 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 NBPF5PQ86XG9 351 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 PSMD1Q99460 953 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 RSPH6AQ9H0K4 717 aa15.75■□□□□ 0.11
SQSTM1-206ENST00000466342 PRKAR2BP31323 418 aa15.74■□□□□ 0.11
SQSTM1-206ENST00000466342 IL17REQ8NFR9 667 aa15.74■□□□□ 0.11
SQSTM1-206ENST00000466342 HEG1Q9ULI3 1381 aa15.74■□□□□ 0.11
SQSTM1-206ENST00000466342 AKAP11Q9UKA4 1901 aa15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 CELF2O95319 508 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 TEFQ10587 303 aa15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 CLEC4GQ6UXB4 293 aa15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 ZNF496Q96IT1 587 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 PHACTR3Q96KR7 559 aa15.73■□□□□ 0.11
SQSTM1-206ENST00000466342 A1BGP04217 495 aa15.72■□□□□ 0.11
SQSTM1-206ENST00000466342 TPTE2Q6XPS3 522 aa15.72■□□□□ 0.11
SQSTM1-206ENST00000466342 DZIP3Q86Y13 1208 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-206ENST00000466342 COL4A5P29400 1685 aa15.71■□□□□ 0.11
SQSTM1-206ENST00000466342 ZNF790Q6PG37 636 aa15.71■□□□□ 0.11
SQSTM1-206ENST00000466342 SNED1Q8TER0 1413 aa15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 NOGQ13253 232 aa15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 CCDC184Q52MB2 194 aa15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 CC2D2BQ6DHV5 1058 aa15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 ADARB2Q9NS39 739 aaKnown RBP15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 SIPA1L3O60292 1781 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-206ENST00000466342 WDR43Q15061 677 aaKnown RBP eCLIP15.69■□□□□ 0.1
SQSTM1-206ENST00000466342 ZIC5Q96T25 663 aa15.69■□□□□ 0.1
SQSTM1-206ENST00000466342 CEMIPQ8WUJ3 1361 aa15.69■□□□□ 0.1
SQSTM1-206ENST00000466342 LARGE2Q8N3Y3 721 aa15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 PLEKHF1Q96S99 279 aa15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 GLIS2Q9BZE0 524 aaPredicted RBP15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 PNNQ9H307 717 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 PGAP2Q9UHJ9 254 aa15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 ZNF652Q9Y2D9 606 aa15.68■□□□□ 0.1
SQSTM1-206ENST00000466342 HTATSF1O43719 755 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 NEFMP07197 916 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 GRIPAP1Q4V328 841 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 DIEXFQ68CQ4 756 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 RTF1Q92541 710 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 GCC1Q96CN9 775 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 FMNL2Q96PY5 1086 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 MRS2Q9HD23 443 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 GPRC5DQ9NZD1 345 aa15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 POLR2AP24928 1970 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-206ENST00000466342 SAGE1Q9NXZ1 904 aa15.66■□□□□ 0.1
SQSTM1-206ENST00000466342 BTBD11A6QL63 1104 aa15.65■□□□□ 0.1
SQSTM1-206ENST00000466342 ZNF408Q9H9D4 720 aa15.65■□□□□ 0.1
SQSTM1-206ENST00000466342 ADAMTS8Q9UP79 889 aa15.65■□□□□ 0.1
SQSTM1-206ENST00000466342 NIP7Q9Y221 180 aaKnown RBP eCLIP15.65■□□□□ 0.1
SQSTM1-206ENST00000466342 MAPK8IP3Q9UPT6 1336 aa15.65■□□□□ 0.1
SQSTM1-206ENST00000466342 FAM177BA6PVY3 158 aa15.64■□□□□ 0.09
SQSTM1-206ENST00000466342 CDC37L1Q7L3B6 337 aa15.64■□□□□ 0.09
SQSTM1-206ENST00000466342 NIM1KQ8IY84 436 aa15.64■□□□□ 0.09
SQSTM1-206ENST00000466342 ZC3H15Q8WU90 426 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-206ENST00000466342 RGL2O15211 777 aa15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 GTF2E1P29083 439 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 HUNKP57058 714 aa15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 CRY2Q49AN0 593 aa15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 NBPF15Q8N660 670 aa15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 USP16Q9Y5T5 823 aa15.63■□□□□ 0.09
SQSTM1-206ENST00000466342 FAM155AB1AL88 458 aaPredicted RBP15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 TRPA1O75762 1119 aa15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 PIP4K2AP48426 406 aaPredicted RBP15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 MCM10Q7L590 875 aa15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 CTU1Q7Z7A3 348 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 PNISRQ8TF01 805 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 RUNDC1Q96C34 613 aa15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 RNF186Q9NXI6 227 aa15.62■□□□□ 0.09
SQSTM1-206ENST00000466342 HIRAP54198 1017 aaPredicted RBP15.61■□□□□ 0.09
SQSTM1-206ENST00000466342 CXCL9Q07325 125 aa15.61■□□□□ 0.09
SQSTM1-206ENST00000466342 CCDC146Q8IYE0 955 aa15.61■□□□□ 0.09
SQSTM1-206ENST00000466342 VPS33BQ9H267 617 aa15.61■□□□□ 0.09
SQSTM1-206ENST00000466342 NUP98P52948 1817 aa15.61■□□□□ 0.09
SQSTM1-206ENST00000466342 PPIP5K2O43314 1243 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 KCNQ3O43525 872 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 HOXA10P31260 410 aaPredicted RBP15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 KIF23Q02241 960 aaPredicted RBP15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 DCTN1Q14203 1278 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 TAF7Q15545 349 aaPredicted RBP15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 NFE2L2Q16236 605 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 RGMBQ6NW40 437 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 CCDC102AQ96A19 550 aa15.6■□□□□ 0.09
SQSTM1-206ENST00000466342 GMPSP49915 693 aaPredicted RBP15.59■□□□□ 0.09
SQSTM1-206ENST00000466342 HABP4Q5JVS0 413 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-206ENST00000466342 RPGRQ92834 1020 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-206ENST00000466342 ZNRF3Q9ULT6 936 aa15.59■□□□□ 0.09
SQSTM1-206ENST00000466342 HPS5Q9UPZ3 1129 aa15.59■□□□□ 0.09
SQSTM1-206ENST00000466342 CCER2I3L3R5 266 aa15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 SNRPA1P09661 255 aaKnown RBP15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 AOC3Q16853 763 aa15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 USP48Q86UV5 1035 aa15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 NYXQ9GZU5 481 aa15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 CDHR2Q9BYE9 1310 aa15.58■□□□□ 0.08
SQSTM1-206ENST00000466342 TMPOP42166 694 aaKnown RBP15.57■□□□□ 0.08
SQSTM1-206ENST00000466342 PKN2Q16513 984 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms