RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 PPP1R42Q7Z4L9 355 aa22.72■■□□□ 1.23
VPS52-214ENST00000463486 RIC3Q7Z5B4 369 aa22.72■■□□□ 1.23
VPS52-214ENST00000463486 SYNE4Q8N205 404 aa22.72■■□□□ 1.23
VPS52-214ENST00000463486 UTP14AQ9BVJ6 771 aaKnown RBP22.72■■□□□ 1.23
VPS52-214ENST00000463486 TNRC6CQ9HCJ0 1690 aaKnown RBP22.71■■□□□ 1.23
VPS52-214ENST00000463486 PI4KAP2A4QPH2 592 aa22.71■■□□□ 1.23
VPS52-214ENST00000463486 FLIIQ13045 1269 aa22.71■■□□□ 1.23
VPS52-214ENST00000463486 CRY2Q49AN0 593 aa22.71■■□□□ 1.23
VPS52-214ENST00000463486 C3orf67Q6ZVT6 689 aa22.71■■□□□ 1.23
VPS52-214ENST00000463486 PI4KAP1Q8N8J0 262 aa22.71■■□□□ 1.23
VPS52-214ENST00000463486 METTL22Q9BUU2 404 aaPredicted RBP22.71■■□□□ 1.23
VPS52-214ENST00000463486 NPHP1O15259 732 aa22.7■■□□□ 1.22
VPS52-214ENST00000463486 MAP3K2Q9Y2U5 619 aa22.7■■□□□ 1.22
VPS52-214ENST00000463486 CACNA1FO60840 1977 aa22.7■■□□□ 1.22
VPS52-214ENST00000463486 ARFGEF1Q9Y6D6 1849 aa22.69■■□□□ 1.22
VPS52-214ENST00000463486 RNF123Q5XPI4 1314 aa22.69■■□□□ 1.22
VPS52-214ENST00000463486 DDX58O95786 925 aaKnown RBP22.69■■□□□ 1.22
VPS52-214ENST00000463486 GTF2E1P29083 439 aaPredicted RBP22.69■■□□□ 1.22
VPS52-214ENST00000463486 HNRNPUQ00839 825 aaKnown RBP eCLIP22.69■■□□□ 1.22
VPS52-214ENST00000463486 STYK1Q6J9G0 422 aa22.69■■□□□ 1.22
VPS52-214ENST00000463486 TTLL6Q8N841 843 aa22.69■■□□□ 1.22
VPS52-214ENST00000463486 IGKV5-2P06315 115 aa22.68■■□□□ 1.22
VPS52-214ENST00000463486 ZNF428Q96B54 188 aa22.68■■□□□ 1.22
VPS52-214ENST00000463486 MASTLQ96GX5 879 aa22.68■■□□□ 1.22
VPS52-214ENST00000463486 MYD88Q99836 296 aa22.68■■□□□ 1.22
VPS52-214ENST00000463486 TRMT112Q9UI30 125 aaKnown RBP22.68■■□□□ 1.22
VPS52-214ENST00000463486 ZNF622Q969S3 477 aaKnown RBP eCLIP22.67■■□□□ 1.228e-7■□□□□ 10.9
VPS52-214ENST00000463486 NPR1P16066 1061 aa22.66■■□□□ 1.22
VPS52-214ENST00000463486 HOXA10P31260 410 aaPredicted RBP22.66■■□□□ 1.22
VPS52-214ENST00000463486 MRPL50Q8N5N7 158 aaKnown RBP22.66■■□□□ 1.22
VPS52-214ENST00000463486 C7orf43Q8WVR3 580 aa22.66■■□□□ 1.22
VPS52-214ENST00000463486 SH3TC1Q8TE82 1336 aa22.65■■□□□ 1.22
VPS52-214ENST00000463486 CCDC191Q8NCU4 936 aa22.65■■□□□ 1.22
VPS52-214ENST00000463486 SSH1Q8WYL5 1049 aa22.65■■□□□ 1.22
VPS52-214ENST00000463486 FAM89AQ96GI7 184 aa22.65■■□□□ 1.22
VPS52-214ENST00000463486 SLX4Q8IY92 1834 aa22.64■■□□□ 1.22
VPS52-214ENST00000463486 HCLS1P14317 486 aaPredicted RBP22.64■■□□□ 1.21
VPS52-214ENST00000463486 CNKSR1Q969H4 720 aa22.64■■□□□ 1.21
VPS52-214ENST00000463486 CHD4Q14839 1912 aa22.64■■□□□ 1.21
VPS52-214ENST00000463486 FKBP5Q13451 457 aaPredicted RBP22.63■■□□□ 1.21
VPS52-214ENST00000463486 PRPF40BQ6NWY9 871 aaKnown RBP22.62■■□□□ 1.21
VPS52-214ENST00000463486 ZBTB38Q8NAP3 1195 aaPredicted RBP22.62■■□□□ 1.21
VPS52-214ENST00000463486 DNAAF4Q8WXU2 420 aa22.62■■□□□ 1.21
VPS52-214ENST00000463486 ZBED9Q6R2W3 1325 aa22.61■■□□□ 1.21
VPS52-214ENST00000463486 NEURL1BA8MQ27 555 aa22.61■■□□□ 1.21
VPS52-214ENST00000463486 CWF19L2Q2TBE0 894 aaKnown RBP22.61■■□□□ 1.21
VPS52-214ENST00000463486 ARHGAP27Q6ZUM4 889 aa22.61■■□□□ 1.21
VPS52-214ENST00000463486 NLRP3Q96P20 1036 aa22.61■■□□□ 1.21
VPS52-214ENST00000463486 CWC25Q9NXE8 425 aaPredicted RBP22.61■■□□□ 1.21
VPS52-214ENST00000463486 DDX60Q8IY21 1712 aaKnown RBP22.6■■□□□ 1.21
VPS52-214ENST00000463486 F6X3S4 739 aa22.6■■□□□ 1.21
VPS52-214ENST00000463486 PCCAP05165 728 aaPredicted RBP22.6■■□□□ 1.21
VPS52-214ENST00000463486 CT47B1P0C2W7 299 aaPredicted RBP22.6■■□□□ 1.21
VPS52-214ENST00000463486 ALDH1L2Q3SY69 923 aa22.6■■□□□ 1.21
VPS52-214ENST00000463486 LAMB2P55268 1798 aa22.59■■□□□ 1.21
VPS52-214ENST00000463486 C21orf2O43822 256 aa22.59■■□□□ 1.21
VPS52-214ENST00000463486 YY1P25490 414 aa22.59■■□□□ 1.21
VPS52-214ENST00000463486 PRELPP51888 382 aa22.59■■□□□ 1.21
VPS52-214ENST00000463486 RTL5Q5HYW3 569 aaPredicted RBP22.59■■□□□ 1.21
VPS52-214ENST00000463486 CRAMP1Q96RY5 1269 aa22.59■■□□□ 1.21
VPS52-214ENST00000463486 NFKBIEO00221 500 aa22.58■■□□□ 1.21
VPS52-214ENST00000463486 ALDH1B1P30837 517 aa22.58■■□□□ 1.21
VPS52-214ENST00000463486 BEND3Q5T5X7 828 aa22.58■■□□□ 1.21
VPS52-214ENST00000463486 LINS1Q8NG48 757 aa22.58■■□□□ 1.21
VPS52-214ENST00000463486 JARID2Q92833 1246 aaPredicted RBP22.58■■□□□ 1.21
VPS52-214ENST00000463486 H7C1W4 665 aa22.57■■□□□ 1.2
VPS52-214ENST00000463486 IRS4O14654 1257 aaPredicted RBP22.57■■□□□ 1.2
VPS52-214ENST00000463486 NEXNQ0ZGT2 675 aa22.57■■□□□ 1.2
VPS52-214ENST00000463486 SF3B3Q15393 1217 aaKnown RBP22.57■■□□□ 1.2
VPS52-214ENST00000463486 OLFM4Q6UX06 510 aa22.57■■□□□ 1.2
VPS52-214ENST00000463486 BCL2L13Q9BXK5 485 aa22.57■■□□□ 1.2
VPS52-214ENST00000463486 SNED1Q8TER0 1413 aa22.57■■□□□ 1.2
VPS52-214ENST00000463486 BRPF1P55201 1214 aaPredicted RBP22.56■■□□□ 1.2
VPS52-214ENST00000463486 GCKRQ14397 625 aa22.56■■□□□ 1.2
VPS52-214ENST00000463486 SLC51AQ86UW1 340 aa22.56■■□□□ 1.2
VPS52-214ENST00000463486 RPGRQ92834 1020 aaKnown RBP22.56■■□□□ 1.2
VPS52-214ENST00000463486 ZNF219Q9P2Y4 722 aaPredicted RBP22.56■■□□□ 1.2
VPS52-214ENST00000463486 RARSP54136 660 aaKnown RBP22.55■■□□□ 1.2
VPS52-214ENST00000463486 CASP7P55210 303 aa22.55■■□□□ 1.2
VPS52-214ENST00000463486 RBM17Q96I25 401 aaKnown RBP22.55■■□□□ 1.2
VPS52-214ENST00000463486 ABCC4O15439 1325 aa22.55■■□□□ 1.2
VPS52-214ENST00000463486 CDHR2Q9BYE9 1310 aa22.55■■□□□ 1.2
VPS52-214ENST00000463486 CACNA1SQ13698 1873 aa22.54■■□□□ 1.2
VPS52-214ENST00000463486 FER1L6Q2WGJ9 1857 aa22.54■■□□□ 1.2
VPS52-214ENST00000463486 RASSF7Q02833 373 aa22.53■■□□□ 1.2
VPS52-214ENST00000463486 PTPRCP08575 1304 aa22.53■■□□□ 1.2
VPS52-214ENST00000463486 COL4A1P02462 1669 aa22.52■■□□□ 1.2
VPS52-214ENST00000463486 SBF1O95248 1867 aa22.52■■□□□ 1.2
VPS52-214ENST00000463486 SMC4Q9NTJ3 1288 aa22.52■■□□□ 1.2
VPS52-214ENST00000463486 LTBP3Q9NS15 1303 aa22.51■■□□□ 1.19
VPS52-214ENST00000463486 PDE8AO60658 829 aa22.5■■□□□ 1.19
VPS52-214ENST00000463486 SOGA3Q5TF21 947 aa22.5■■□□□ 1.19
VPS52-214ENST00000463486 C9orf131Q5VYM1 1079 aa22.5■■□□□ 1.19
VPS52-214ENST00000463486 UBE3BQ7Z3V4 1068 aa22.5■■□□□ 1.19
VPS52-214ENST00000463486 TAF1P21675 1872 aa22.49■■□□□ 1.19
VPS52-214ENST00000463486 BBOX1O75936 387 aa22.49■■□□□ 1.19
VPS52-214ENST00000463486 CCDC93Q567U6 631 aa22.49■■□□□ 1.19
VPS52-214ENST00000463486 PPEF1O14829 653 aaPredicted RBP22.48■■□□□ 1.19
VPS52-214ENST00000463486 ALDH1L1O75891 902 aa22.48■■□□□ 1.19
VPS52-214ENST00000463486 GRAPQ13588 217 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms