RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SLC10A5Q5PT55 438 aa29.67■■■□□ 2.34
PTPN4-208ENST00000460289 NLRP10Q86W26 655 aa29.67■■■□□ 2.34
PTPN4-208ENST00000460289 C1QTNF8P60827 252 aa29.66■■■□□ 2.34
PTPN4-208ENST00000460289 TSPYL6Q8N831 410 aa29.66■■■□□ 2.34
PTPN4-208ENST00000460289 RPGRQ92834 1020 aaKnown RBP29.66■■■□□ 2.34
PTPN4-208ENST00000460289 NLRP3Q96P20 1036 aa29.66■■■□□ 2.34
PTPN4-208ENST00000460289 C7orf43Q8WVR3 580 aa29.65■■■□□ 2.34
PTPN4-208ENST00000460289 ZC3H4Q9UPT8 1303 aaKnown RBP29.65■■■□□ 2.34
PTPN4-208ENST00000460289 SLX4Q8IY92 1834 aa29.64■■■□□ 2.34
PTPN4-208ENST00000460289 HOXA10P31260 410 aaPredicted RBP29.64■■■□□ 2.34
PTPN4-208ENST00000460289 GOLGA2Q08379 1002 aa29.64■■■□□ 2.34
PTPN4-208ENST00000460289 TAOK3Q9H2K8 898 aa29.64■■■□□ 2.34
PTPN4-208ENST00000460289 TRMT112Q9UI30 125 aaKnown RBP29.64■■■□□ 2.34
PTPN4-208ENST00000460289 SBF1O95248 1867 aa29.63■■■□□ 2.33
PTPN4-208ENST00000460289 TWISTNBQ3B726 338 aaPredicted RBP29.63■■■□□ 2.33
PTPN4-208ENST00000460289 CCDC93Q567U6 631 aa29.63■■■□□ 2.33
PTPN4-208ENST00000460289 RIC3Q7Z5B4 369 aa29.63■■■□□ 2.33
PTPN4-208ENST00000460289 PHAXQ9H814 394 aaKnown RBP29.63■■■□□ 2.33
PTPN4-208ENST00000460289 LTBP3Q9NS15 1303 aa29.63■■■□□ 2.33
PTPN4-208ENST00000460289 PRELPP51888 382 aa29.62■■■□□ 2.33
PTPN4-208ENST00000460289 RBM17Q96I25 401 aaKnown RBP29.62■■■□□ 2.33
PTPN4-208ENST00000460289 ISCA1Q9BUE6 129 aa29.61■■■□□ 2.33
PTPN4-208ENST00000460289 STK31Q9BXU1 1019 aa29.61■■■□□ 2.33
PTPN4-208ENST00000460289 KDM2BQ8NHM5 1336 aa29.61■■■□□ 2.33
PTPN4-208ENST00000460289 SH3TC1Q8TE82 1336 aa29.61■■■□□ 2.33
PTPN4-208ENST00000460289 ARFGEF2Q9Y6D5 1785 aa29.6■■■□□ 2.33
PTPN4-208ENST00000460289 DDX58O95786 925 aaKnown RBP29.6■■■□□ 2.33
PTPN4-208ENST00000460289 RTKN2Q8IZC4 609 aa29.6■■■□□ 2.33
PTPN4-208ENST00000460289 CRAMP1Q96RY5 1269 aa29.6■■■□□ 2.33
PTPN4-208ENST00000460289 ANKRD36CQ5JPF3 1778 aa29.59■■■□□ 2.33
PTPN4-208ENST00000460289 TRIM28Q13263 835 aaKnown RBP29.59■■■□□ 2.33
PTPN4-208ENST00000460289 FANCIQ9NVI1 1328 aa29.59■■■□□ 2.33
PTPN4-208ENST00000460289 TNRC6CQ9HCJ0 1690 aaKnown RBP29.59■■■□□ 2.33
PTPN4-208ENST00000460289 ATP5J2-PTCD1G3V325 749 aa29.58■■■□□ 2.33
PTPN4-208ENST00000460289 CC2D2BQ6DHV5 1058 aa29.57■■■□□ 2.32
PTPN4-208ENST00000460289 C3orf67Q6ZVT6 689 aa29.57■■■□□ 2.32
PTPN4-208ENST00000460289 FER1L6Q2WGJ9 1857 aa29.57■■■□□ 2.32
PTPN4-208ENST00000460289 KIF3CO14782 793 aa29.56■■■□□ 2.32
PTPN4-208ENST00000460289 CACNA1SQ13698 1873 aa29.56■■■□□ 2.32
PTPN4-208ENST00000460289 HCLS1P14317 486 aaPredicted RBP29.55■■■□□ 2.32
PTPN4-208ENST00000460289 GRIPAP1Q4V328 841 aa29.55■■■□□ 2.32
PTPN4-208ENST00000460289 MYH16Q9H6N6 1097 aa29.55■■■□□ 2.32
PTPN4-208ENST00000460289 FKBP4Q02790 459 aaKnown RBP eCLIP29.54■■■□□ 2.32
PTPN4-208ENST00000460289 SYNE4Q8N205 404 aa29.54■■■□□ 2.32
PTPN4-208ENST00000460289 NMRK2Q9NPI5 230 aa29.54■■■□□ 2.32
PTPN4-208ENST00000460289 GLTPD2A6NH11 291 aa29.53■■■□□ 2.32
PTPN4-208ENST00000460289 OLFM4Q6UX06 510 aa29.53■■■□□ 2.32
PTPN4-208ENST00000460289 CCER2I3L3R5 266 aa29.52■■■□□ 2.32
PTPN4-208ENST00000460289 SLC4A2P04920 1241 aa29.52■■■□□ 2.32
PTPN4-208ENST00000460289 DPY19L2Q6NUT2 758 aa29.52■■■□□ 2.32
PTPN4-208ENST00000460289 FAM89AQ96GI7 184 aa29.52■■■□□ 2.32
PTPN4-208ENST00000460289 MYD88Q99836 296 aa29.52■■■□□ 2.32
PTPN4-208ENST00000460289 TMX4Q9H1E5 349 aaPredicted RBP29.52■■■□□ 2.32
PTPN4-208ENST00000460289 TCERG1O14776 1098 aaKnown RBP29.51■■■□□ 2.31
PTPN4-208ENST00000460289 PPEF1O14829 653 aaPredicted RBP29.51■■■□□ 2.31
PTPN4-208ENST00000460289 EXOSC9Q06265 439 aaKnown RBP29.51■■■□□ 2.31
PTPN4-208ENST00000460289 KSR2Q6VAB6 950 aa29.51■■■□□ 2.31
PTPN4-208ENST00000460289 ZNF428Q96B54 188 aa29.51■■■□□ 2.31
PTPN4-208ENST00000460289 METTL22Q9BUU2 404 aaPredicted RBP29.51■■■□□ 2.31
PTPN4-208ENST00000460289 CCDC88AQ3V6T2 1871 aa29.51■■■□□ 2.31
PTPN4-208ENST00000460289 VAMP4O75379 141 aa29.5■■■□□ 2.31
PTPN4-208ENST00000460289 CCDC191Q8NCU4 936 aa29.5■■■□□ 2.31
PTPN4-208ENST00000460289 SPINK5Q9NQ38 1064 aaPredicted RBP29.5■■■□□ 2.31
PTPN4-208ENST00000460289 BBOX1O75936 387 aa29.49■■■□□ 2.31
PTPN4-208ENST00000460289 HSP90B1P14625 803 aaKnown RBP29.49■■■□□ 2.31
PTPN4-208ENST00000460289 DDX46Q7L014 1031 aaKnown RBP29.49■■■□□ 2.31
PTPN4-208ENST00000460289 PSMD1Q99460 953 aa29.49■■■□□ 2.31
PTPN4-208ENST00000460289 RRAGCQ9HB90 399 aa29.49■■■□□ 2.31
PTPN4-208ENST00000460289 MAP3K2Q9Y2U5 619 aa29.49■■■□□ 2.31
PTPN4-208ENST00000460289 PI4KAP2A4QPH2 592 aa29.48■■■□□ 2.31
PTPN4-208ENST00000460289 TOMM70O94826 608 aa29.48■■■□□ 2.31
PTPN4-208ENST00000460289 PI4KAP1Q8N8J0 262 aa29.48■■■□□ 2.31
PTPN4-208ENST00000460289 ZBTB38Q8NAP3 1195 aaPredicted RBP29.48■■■□□ 2.31
PTPN4-208ENST00000460289 ABCC4O15439 1325 aa29.47■■■□□ 2.31
PTPN4-208ENST00000460289 C16orf71Q8IYS4 520 aaPredicted RBP29.47■■■□□ 2.31
PTPN4-208ENST00000460289 ZNF277Q9NRM2 450 aaPredicted RBP29.47■■■□□ 2.31
PTPN4-208ENST00000460289 CWC25Q9NXE8 425 aaPredicted RBP29.47■■■□□ 2.31
PTPN4-208ENST00000460289 IRS4O14654 1257 aaPredicted RBP29.46■■■□□ 2.31
PTPN4-208ENST00000460289 NEXNQ0ZGT2 675 aa29.46■■■□□ 2.31
PTPN4-208ENST00000460289 RTL5Q5HYW3 569 aaPredicted RBP29.46■■■□□ 2.31
PTPN4-208ENST00000460289 ATP6V0A2Q9Y487 856 aa29.46■■■□□ 2.31
PTPN4-208ENST00000460289 ZNF521Q96K83 1311 aa29.45■■■□□ 2.31
PTPN4-208ENST00000460289 SF3B3Q15393 1217 aaKnown RBP29.45■■■□□ 2.31
PTPN4-208ENST00000460289 G2E3Q7L622 706 aa29.45■■■□□ 2.31
PTPN4-208ENST00000460289 DICER1Q9UPY3 1922 aaKnown RBP29.44■■■□□ 2.3
PTPN4-208ENST00000460289 IARSP41252 1262 aaKnown RBP29.44■■■□□ 2.3
PTPN4-208ENST00000460289 TIAM2Q8IVF5 1701 aa29.43■■■□□ 2.3
PTPN4-208ENST00000460289 PCCAP05165 728 aaPredicted RBP29.43■■■□□ 2.3
PTPN4-208ENST00000460289 VEGFAP15692 232 aaPredicted RBP29.43■■■□□ 2.3
PTPN4-208ENST00000460289 FLIIQ13045 1269 aa29.43■■■□□ 2.3
PTPN4-208ENST00000460289 GRAPQ13588 217 aa29.43■■■□□ 2.3
PTPN4-208ENST00000460289 SP8Q8IXZ3 490 aa29.43■■■□□ 2.3
PTPN4-208ENST00000460289 GRAPLQ8TC17 118 aaPredicted RBP29.43■■■□□ 2.3
PTPN4-208ENST00000460289 TMC4Q7Z404 712 aa29.42■■■□□ 2.3
PTPN4-208ENST00000460289 SNED1Q8TER0 1413 aa29.42■■■□□ 2.3
PTPN4-208ENST00000460289 FKBP5Q13451 457 aaPredicted RBP29.4■■■□□ 2.3
PTPN4-208ENST00000460289 RBM46Q8TBY0 533 aaKnown RBP29.4■■■□□ 2.3
PTPN4-208ENST00000460289 JDP2Q8WYK2 163 aa29.4■■■□□ 2.3
PTPN4-208ENST00000460289 LAMB2P55268 1798 aa29.39■■■□□ 2.29
PTPN4-208ENST00000460289 IGKV5-2P06315 115 aa29.38■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms