RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 HSP90AB3PQ58FF7 597 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 DUSP27Q5VZP5 1158 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 PPP1R42Q7Z4L9 355 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 TAOK3Q9H2K8 898 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 ZNF219Q9P2Y4 722 aaPredicted RBP15.66■□□□□ 0.1
USP40-210ENST00000454354 DBF4Q9UBU7 674 aaPredicted RBP15.66■□□□□ 0.1
USP40-210ENST00000454354 ALDH1B1P30837 517 aa15.65■□□□□ 0.1
USP40-210ENST00000454354 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
USP40-210ENST00000454354 HOXA10P31260 410 aaPredicted RBP15.64■□□□□ 0.09
USP40-210ENST00000454354 AIMP1Q12904 312 aaKnown RBP15.64■□□□□ 0.09
USP40-210ENST00000454354 CCDC93Q567U6 631 aa15.64■□□□□ 0.09
USP40-210ENST00000454354 MRS2Q9HD23 443 aa15.64■□□□□ 0.09
USP40-210ENST00000454354 SCN4AP35499 1836 aa15.64■□□□□ 0.09
USP40-210ENST00000454354 TAF1P21675 1872 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 GLTPD2A6NH11 291 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 TOMM70O94826 608 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 TCIRG1Q13488 830 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 UTP14AQ9BVJ6 771 aaKnown RBP15.63■□□□□ 0.09
USP40-210ENST00000454354 HYPKQ9NX55 129 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 LRRC37AA6NMS7 1700 aa15.63■□□□□ 0.09
USP40-210ENST00000454354 SLC10A5Q5PT55 438 aa15.62■□□□□ 0.09
USP40-210ENST00000454354 NLRP10Q86W26 655 aa15.62■□□□□ 0.09
USP40-210ENST00000454354 PLBD2Q8NHP8 589 aa15.62■□□□□ 0.09
USP40-210ENST00000454354 HSPA6P17066 643 aa15.61■□□□□ 0.09
USP40-210ENST00000454354 FKBP4Q02790 459 aaKnown RBP eCLIP15.61■□□□□ 0.09
USP40-210ENST00000454354 C3orf67Q6ZVT6 689 aa15.61■□□□□ 0.09
USP40-210ENST00000454354 RTKN2Q8IZC4 609 aa15.61■□□□□ 0.09
USP40-210ENST00000454354 RBM46Q8TBY0 533 aaKnown RBP15.61■□□□□ 0.09
USP40-210ENST00000454354 RPGRQ92834 1020 aaKnown RBP15.61■□□□□ 0.09
USP40-210ENST00000454354 CRAMP1Q96RY5 1269 aa15.61■□□□□ 0.09
USP40-210ENST00000454354 OLFM4Q6UX06 510 aa15.6■□□□□ 0.09
USP40-210ENST00000454354 ANKRD13DQ6ZTN6 518 aa15.6■□□□□ 0.09
USP40-210ENST00000454354 WWC1Q8IX03 1113 aa15.6■□□□□ 0.09
USP40-210ENST00000454354 C8orf58Q8NAV2 365 aa15.6■□□□□ 0.09
USP40-210ENST00000454354 IL16Q14005 1332 aa15.6■□□□□ 0.09
USP40-210ENST00000454354 MYH3P11055 1940 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 CC2D2BQ6DHV5 1058 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 RBM17Q96I25 401 aaKnown RBP15.59■□□□□ 0.09
USP40-210ENST00000454354 NLRP3Q96P20 1036 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 PSMD1Q99460 953 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 ISCA1Q9BUE6 129 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 CHMP4AQ9BY43 222 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 RRAGCQ9HB90 399 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 SH3TC1Q8TE82 1336 aa15.59■□□□□ 0.09
USP40-210ENST00000454354 ELL2O00472 640 aaPredicted RBP15.57■□□□□ 0.08
USP40-210ENST00000454354 TRIM28Q13263 835 aaKnown RBP15.57■□□□□ 0.08
USP40-210ENST00000454354 GRIPAP1Q4V328 841 aa15.57■□□□□ 0.08
USP40-210ENST00000454354 DPY19L2Q6NUT2 758 aa15.57■□□□□ 0.08
USP40-210ENST00000454354 C16orf71Q8IYS4 520 aaPredicted RBP15.57■□□□□ 0.08
USP40-210ENST00000454354 TRMT112Q9UI30 125 aaKnown RBP15.57■□□□□ 0.08
USP40-210ENST00000454354 ABCC4O15439 1325 aa15.57■□□□□ 0.08
USP40-210ENST00000454354 COL4A5P29400 1685 aa15.57■□□□□ 0.08
USP40-210ENST00000454354 POTECB2RU33 542 aa15.56■□□□□ 0.08
USP40-210ENST00000454354 PPEF1O14829 653 aaPredicted RBP15.56■□□□□ 0.08
USP40-210ENST00000454354 VEGFAP15692 232 aaPredicted RBP15.56■□□□□ 0.08
USP40-210ENST00000454354 GOLGA2Q08379 1002 aa15.56■□□□□ 0.08
USP40-210ENST00000454354 FSTL1Q12841 308 aa15.56■□□□□ 0.08
USP40-210ENST00000454354 CCDC30Q5VVM6 783 aa15.56■□□□□ 0.08
USP40-210ENST00000454354 TSPYL6Q8N831 410 aa15.56■□□□□ 0.08
USP40-210ENST00000454354 TSR2Q969E8 191 aaKnown RBP15.56■□□□□ 0.08
USP40-210ENST00000454354 PHAXQ9H814 394 aaKnown RBP15.56■□□□□ 0.08
USP40-210ENST00000454354 ZNF277Q9NRM2 450 aaPredicted RBP15.56■□□□□ 0.08
USP40-210ENST00000454354 LTBP1Q14766 1721 aa15.55■□□□□ 0.08
USP40-210ENST00000454354 HCLS1P14317 486 aaPredicted RBP15.55■□□□□ 0.08
USP40-210ENST00000454354 IARSP41252 1262 aaKnown RBP15.55■□□□□ 0.08
USP40-210ENST00000454354 SYNE4Q8N205 404 aa15.55■□□□□ 0.08
USP40-210ENST00000454354 ADAMTSL1Q8N6G6 1762 aa15.54■□□□□ 0.08
USP40-210ENST00000454354 L3MBTL3Q96JM7 780 aaPredicted RBP15.54■□□□□ 0.08
USP40-210ENST00000454354 COL4A1P02462 1669 aa15.54■□□□□ 0.08
USP40-210ENST00000454354 DUOX1Q9NRD9 1551 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 FANCIQ9NVI1 1328 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 ATP5J2-PTCD1G3V325 749 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 APLP1P51693 650 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 RIC3Q7Z5B4 369 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 SLC51AQ86UW1 340 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 WDR63Q8IWG1 891 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 SMC1BQ8NDV3 1235 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 ATP6V0A2Q9Y487 856 aa15.53■□□□□ 0.08
USP40-210ENST00000454354 ZNF541Q9H0D2 1346 aa15.52■□□□□ 0.08
USP40-210ENST00000454354 FZD9O00144 591 aa15.52■□□□□ 0.08
USP40-210ENST00000454354 DDNO94850 711 aaPredicted RBP15.52■□□□□ 0.08
USP40-210ENST00000454354 TWISTNBQ3B726 338 aaPredicted RBP15.52■□□□□ 0.08
USP40-210ENST00000454354 FAM89AQ96GI7 184 aa15.52■□□□□ 0.08
USP40-210ENST00000454354 BBOX1O75936 387 aa15.51■□□□□ 0.07
USP40-210ENST00000454354 DDX58O95786 925 aaKnown RBP15.51■□□□□ 0.07
USP40-210ENST00000454354 GRAPQ13588 217 aa15.51■□□□□ 0.07
USP40-210ENST00000454354 SF3B3Q15393 1217 aaKnown RBP15.51■□□□□ 0.07
USP40-210ENST00000454354 DDX46Q7L014 1031 aaKnown RBP15.51■□□□□ 0.07
USP40-210ENST00000454354 GRAPLQ8TC17 118 aaPredicted RBP15.51■□□□□ 0.07
USP40-210ENST00000454354 SPEF2Q9C093 1822 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 TMC4Q7Z404 712 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 SP8Q8IXZ3 490 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 ZBTB38Q8NAP3 1195 aaPredicted RBP15.5■□□□□ 0.07
USP40-210ENST00000454354 CCDC191Q8NCU4 936 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 MYD88Q99836 296 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 METTL22Q9BUU2 404 aaPredicted RBP15.5■□□□□ 0.07
USP40-210ENST00000454354 STK31Q9BXU1 1019 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 RTFDC1Q9BY42 306 aaPredicted RBP15.5■□□□□ 0.07
USP40-210ENST00000454354 VPS33BQ9H267 617 aa15.5■□□□□ 0.07
USP40-210ENST00000454354 IQCA1LA6NCM1 817 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms