RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 GLTPD2A6NH11 291 aa25.21■■□□□ 1.63
USP40-207ENST00000450940 HSP90AB3PQ58FF7 597 aa25.21■■□□□ 1.63
USP40-207ENST00000450940 SLC10A5Q5PT55 438 aa25.21■■□□□ 1.63
USP40-207ENST00000450940 RNF123Q5XPI4 1314 aa25.2■■□□□ 1.62
USP40-207ENST00000450940 AIMP1Q12904 312 aaKnown RBP25.2■■□□□ 1.62
USP40-207ENST00000450940 TCIRG1Q13488 830 aa25.2■■□□□ 1.62
USP40-207ENST00000450940 CCDC27Q2M243 656 aa25.2■■□□□ 1.62
USP40-207ENST00000450940 NCBP3Q53F19 620 aaKnown RBP25.2■■□□□ 1.62
USP40-207ENST00000450940 CCDC93Q567U6 631 aa25.19■■□□□ 1.62
USP40-207ENST00000450940 NLRP10Q86W26 655 aa25.18■■□□□ 1.62
USP40-207ENST00000450940 UTP14AQ9BVJ6 771 aaKnown RBP25.18■■□□□ 1.62
USP40-207ENST00000450940 MRS2Q9HD23 443 aa25.18■■□□□ 1.62
USP40-207ENST00000450940 HYPKQ9NX55 129 aa25.18■■□□□ 1.62
USP40-207ENST00000450940 PLBD2Q8NHP8 589 aa25.17■■□□□ 1.62
USP40-207ENST00000450940 RRAGCQ9HB90 399 aa25.17■■□□□ 1.62
USP40-207ENST00000450940 HSPA6P17066 643 aa25.16■■□□□ 1.62
USP40-207ENST00000450940 ANKRD13DQ6ZTN6 518 aa25.16■■□□□ 1.62
USP40-207ENST00000450940 RTKN2Q8IZC4 609 aa25.16■■□□□ 1.62
USP40-207ENST00000450940 RBM46Q8TBY0 533 aaKnown RBP25.16■■□□□ 1.62
USP40-207ENST00000450940 SNED1Q8TER0 1413 aa25.16■■□□□ 1.62
USP40-207ENST00000450940 CRAMP1Q96RY5 1269 aa25.16■■□□□ 1.62
USP40-207ENST00000450940 FKBP4Q02790 459 aaKnown RBP eCLIP25.15■■□□□ 1.62
USP40-207ENST00000450940 RPGRQ92834 1020 aaKnown RBP25.15■■□□□ 1.62
USP40-207ENST00000450940 CEP350Q5VT06 3117 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 LAMB2P55268 1798 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 OLFM4Q6UX06 510 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 C3orf67Q6ZVT6 689 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 WWC1Q8IX03 1113 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 C8orf58Q8NAV2 365 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 NLRP3Q96P20 1036 aa25.14■■□□□ 1.62
USP40-207ENST00000450940 WDR90Q96KV7 1748 aa25.14■■□□□ 1.61
USP40-207ENST00000450940 CC2D2BQ6DHV5 1058 aa25.13■■□□□ 1.61
USP40-207ENST00000450940 DPY19L2Q6NUT2 758 aa25.13■■□□□ 1.61
USP40-207ENST00000450940 VEGFAP15692 232 aaPredicted RBP25.12■■□□□ 1.61
USP40-207ENST00000450940 RBM17Q96I25 401 aaKnown RBP25.12■■□□□ 1.61
USP40-207ENST00000450940 ISCA1Q9BUE6 129 aa25.12■■□□□ 1.61
USP40-207ENST00000450940 CHMP4AQ9BY43 222 aa25.12■■□□□ 1.61
USP40-207ENST00000450940 ELL2O00472 640 aaPredicted RBP25.11■■□□□ 1.61
USP40-207ENST00000450940 GRIPAP1Q4V328 841 aa25.11■■□□□ 1.61
USP40-207ENST00000450940 C16orf71Q8IYS4 520 aaPredicted RBP25.11■■□□□ 1.61
USP40-207ENST00000450940 IL16Q14005 1332 aa25.11■■□□□ 1.61
USP40-207ENST00000450940 POTECB2RU33 542 aa25.1■■□□□ 1.61
USP40-207ENST00000450940 TRIM28Q13263 835 aaKnown RBP25.1■■□□□ 1.61
USP40-207ENST00000450940 PSMD1Q99460 953 aa25.1■■□□□ 1.61
USP40-207ENST00000450940 TRMT112Q9UI30 125 aaKnown RBP25.1■■□□□ 1.61
USP40-207ENST00000450940 SH3TC1Q8TE82 1336 aa25.1■■□□□ 1.61
USP40-207ENST00000450940 FSTL1Q12841 308 aa25.09■■□□□ 1.61
USP40-207ENST00000450940 SYNE4Q8N205 404 aa25.09■■□□□ 1.61
USP40-207ENST00000450940 DDX60Q8IY21 1712 aaKnown RBP25.07■■□□□ 1.6
USP40-207ENST00000450940 CCDC30Q5VVM6 783 aa25.07■■□□□ 1.6
USP40-207ENST00000450940 TSPYL6Q8N831 410 aa25.07■■□□□ 1.6
USP40-207ENST00000450940 PHAXQ9H814 394 aaKnown RBP25.07■■□□□ 1.6
USP40-207ENST00000450940 ZNF277Q9NRM2 450 aaPredicted RBP25.07■■□□□ 1.6
USP40-207ENST00000450940 HCLS1P14317 486 aaPredicted RBP25.06■■□□□ 1.6
USP40-207ENST00000450940 TSR2Q969E8 191 aaKnown RBP25.06■■□□□ 1.6
USP40-207ENST00000450940 PPEF1O14829 653 aaPredicted RBP25.05■■□□□ 1.6
USP40-207ENST00000450940 IARSP41252 1262 aaKnown RBP25.05■■□□□ 1.6
USP40-207ENST00000450940 ATP5J2-PTCD1G3V325 749 aa25.04■■□□□ 1.6
USP40-207ENST00000450940 GOLGA2Q08379 1002 aa25.04■■□□□ 1.6
USP40-207ENST00000450940 ABCC4O15439 1325 aa25.04■■□□□ 1.6
USP40-207ENST00000450940 BBOX1O75936 387 aa25.03■■□□□ 1.6
USP40-207ENST00000450940 DDNO94850 711 aaPredicted RBP25.03■■□□□ 1.6
USP40-207ENST00000450940 APLP1P51693 650 aa25.03■■□□□ 1.6
USP40-207ENST00000450940 RIC3Q7Z5B4 369 aa25.03■■□□□ 1.6
USP40-207ENST00000450940 WDR63Q8IWG1 891 aa25.03■■□□□ 1.6
USP40-207ENST00000450940 ATP6V0A2Q9Y487 856 aa25.03■■□□□ 1.6
USP40-207ENST00000450940 FZD9O00144 591 aa25.02■■□□□ 1.6
USP40-207ENST00000450940 SMC1BQ8NDV3 1235 aa25.02■■□□□ 1.6
USP40-207ENST00000450940 L3MBTL3Q96JM7 780 aaPredicted RBP25.02■■□□□ 1.6
USP40-207ENST00000450940 SCN4AP35499 1836 aa25.02■■□□□ 1.6
USP40-207ENST00000450940 TAF1P21675 1872 aa25.02■■□□□ 1.6
USP40-207ENST00000450940 FAM89AQ96GI7 184 aa25.01■■□□□ 1.59
USP40-207ENST00000450940 CACNA1FO60840 1977 aa25■■□□□ 1.59
USP40-207ENST00000450940 SF3B3Q15393 1217 aaKnown RBP25■■□□□ 1.59
USP40-207ENST00000450940 SLC51AQ86UW1 340 aa25■■□□□ 1.59
USP40-207ENST00000450940 SP8Q8IXZ3 490 aa25■■□□□ 1.59
USP40-207ENST00000450940 COL4A5P29400 1685 aa24.99■■□□□ 1.59
USP40-207ENST00000450940 TWISTNBQ3B726 338 aaPredicted RBP24.99■■□□□ 1.59
USP40-207ENST00000450940 DDX46Q7L014 1031 aaKnown RBP24.99■■□□□ 1.59
USP40-207ENST00000450940 ZNF541Q9H0D2 1346 aa24.98■■□□□ 1.59
USP40-207ENST00000450940 TCERG1O14776 1098 aaKnown RBP24.98■■□□□ 1.59
USP40-207ENST00000450940 DDX58O95786 925 aaKnown RBP24.98■■□□□ 1.59
USP40-207ENST00000450940 GRAPQ13588 217 aa24.98■■□□□ 1.59
USP40-207ENST00000450940 CCDC191Q8NCU4 936 aa24.98■■□□□ 1.59
USP40-207ENST00000450940 GRAPLQ8TC17 118 aaPredicted RBP24.98■■□□□ 1.59
USP40-207ENST00000450940 ZNF428Q96B54 188 aa24.98■■□□□ 1.59
USP40-207ENST00000450940 METTL22Q9BUU2 404 aaPredicted RBP24.98■■□□□ 1.59
USP40-207ENST00000450940 VPS33BQ9H267 617 aa24.98■■□□□ 1.59
USP40-207ENST00000450940 ZBTB38Q8NAP3 1195 aaPredicted RBP24.97■■□□□ 1.59
USP40-207ENST00000450940 JDP2Q8WYK2 163 aa24.97■■□□□ 1.59
USP40-207ENST00000450940 RTFDC1Q9BY42 306 aaPredicted RBP24.97■■□□□ 1.59
USP40-207ENST00000450940 TMX4Q9H1E5 349 aaPredicted RBP24.97■■□□□ 1.59
USP40-207ENST00000450940 FANCIQ9NVI1 1328 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 LRRC37AA6NMS7 1700 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 KSR2Q6VAB6 950 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 TMC4Q7Z404 712 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 MYD88Q99836 296 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 STK31Q9BXU1 1019 aa24.96■■□□□ 1.59
USP40-207ENST00000450940 IQCA1LA6NCM1 817 aa24.95■■□□□ 1.58
USP40-207ENST00000450940 IRS4O14654 1257 aaPredicted RBP24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms