RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ANKRD36CQ5JPF3 1778 aa22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 ALDH1B1P30837 517 aa22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 HNRNPUQ00839 825 aaKnown RBP eCLIP22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 SOGA3Q5TF21 947 aa22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 C3orf67Q6ZVT6 689 aa22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 UTP14AQ9BVJ6 771 aaKnown RBP22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 DBF4Q9UBU7 674 aaPredicted RBP22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 DICER1Q9UPY3 1922 aaKnown RBP22.03■■□□□ 1.12
PRPF40A-204ENST00000450303 IBTKQ9P2D0 1353 aaPredicted RBP22.02■■□□□ 1.12
PRPF40A-204ENST00000450303 CRY2Q49AN0 593 aa22.02■■□□□ 1.12
PRPF40A-204ENST00000450303 NCBP3Q53F19 620 aaKnown RBP22.02■■□□□ 1.12
PRPF40A-204ENST00000450303 CCDC93Q567U6 631 aa22.02■■□□□ 1.12
PRPF40A-204ENST00000450303 RPGRQ92834 1020 aaKnown RBP22.02■■□□□ 1.12
PRPF40A-204ENST00000450303 GLTPD2A6NH11 291 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 TOMM70O94826 608 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 TCIRG1Q13488 830 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 HSP90AB3PQ58FF7 597 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 C16orf71Q8IYS4 520 aaPredicted RBP22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 C8orf58Q8NAV2 365 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 LTBP3Q9NS15 1303 aa22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 ZC3H4Q9UPT8 1303 aaKnown RBP22.01■■□□□ 1.11
PRPF40A-204ENST00000450303 NLRP10Q86W26 655 aa22■■□□□ 1.11
PRPF40A-204ENST00000450303 SYNE4Q8N205 404 aa22■■□□□ 1.11
PRPF40A-204ENST00000450303 TCERG1O14776 1098 aaKnown RBP21.99■■□□□ 1.11
PRPF40A-204ENST00000450303 ANKRD13DQ6ZTN6 518 aa21.99■■□□□ 1.11
PRPF40A-204ENST00000450303 HYPKQ9NX55 129 aa21.99■■□□□ 1.11
PRPF40A-204ENST00000450303 SALL2Q9Y467 1007 aaPredicted RBP21.99■■□□□ 1.11
PRPF40A-204ENST00000450303 HSPA6P17066 643 aa21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 SLC51AQ86UW1 340 aa21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 PLBD2Q8NHP8 589 aa21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 TSR2Q969E8 191 aaKnown RBP21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 RBM17Q96I25 401 aaKnown RBP21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 NLRP3Q96P20 1036 aa21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 ZNF277Q9NRM2 450 aaPredicted RBP21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 TRMT112Q9UI30 125 aaKnown RBP21.98■■□□□ 1.11
PRPF40A-204ENST00000450303 RIC1Q4ADV7 1423 aa21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 HCLS1P14317 486 aaPredicted RBP21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 HOXA10P31260 410 aaPredicted RBP21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 FKBP4Q02790 459 aaKnown RBP eCLIP21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 SLC10A5Q5PT55 438 aa21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 WWC1Q8IX03 1113 aa21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 PHAXQ9H814 394 aaKnown RBP21.97■■□□□ 1.11
PRPF40A-204ENST00000450303 ATP5J2-PTCD1G3V325 749 aa21.96■■□□□ 1.11
PRPF40A-204ENST00000450303 DPY19L2Q6NUT2 758 aa21.96■■□□□ 1.11
PRPF40A-204ENST00000450303 RTKN2Q8IZC4 609 aa21.96■■□□□ 1.11
PRPF40A-204ENST00000450303 TSPYL6Q8N831 410 aa21.96■■□□□ 1.11
PRPF40A-204ENST00000450303 LAMB2P55268 1798 aa21.95■■□□□ 1.1
PRPF40A-204ENST00000450303 CCDC27Q2M243 656 aa21.95■■□□□ 1.1
PRPF40A-204ENST00000450303 CRAMP1Q96RY5 1269 aa21.95■■□□□ 1.1
PRPF40A-204ENST00000450303 RBM46Q8TBY0 533 aaKnown RBP21.94■■□□□ 1.1
PRPF40A-204ENST00000450303 POTECB2RU33 542 aa21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 PPEF1O14829 653 aaPredicted RBP21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 DDNO94850 711 aaPredicted RBP21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 VEGFAP15692 232 aaPredicted RBP21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 RIC3Q7Z5B4 369 aa21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 SH3TC1Q8TE82 1336 aa21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 ISCA1Q9BUE6 129 aa21.93■■□□□ 1.1
PRPF40A-204ENST00000450303 RNF123Q5XPI4 1314 aa21.92■■□□□ 1.1
PRPF40A-204ENST00000450303 RTL5Q5HYW3 569 aaPredicted RBP21.92■■□□□ 1.1
PRPF40A-204ENST00000450303 ZBED9Q6R2W3 1325 aa21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 IARSP41252 1262 aaKnown RBP21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 GOLGA2Q08379 1002 aa21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 CCDC30Q5VVM6 783 aa21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 FAM89AQ96GI7 184 aa21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 TAF1P21675 1872 aa21.91■■□□□ 1.1
PRPF40A-204ENST00000450303 ABCC4O15439 1325 aa21.9■■□□□ 1.1
PRPF40A-204ENST00000450303 WDR90Q96KV7 1748 aa21.9■■□□□ 1.1
PRPF40A-204ENST00000450303 SNED1Q8TER0 1413 aa21.89■■□□□ 1.1
PRPF40A-204ENST00000450303 CC2D2BQ6DHV5 1058 aa21.89■■□□□ 1.09
PRPF40A-204ENST00000450303 MYD88Q99836 296 aa21.89■■□□□ 1.09
PRPF40A-204ENST00000450303 DDX60Q8IY21 1712 aaKnown RBP21.89■■□□□ 1.09
PRPF40A-204ENST00000450303 WDR63Q8IWG1 891 aa21.88■■□□□ 1.09
PRPF40A-204ENST00000450303 PSMD1Q99460 953 aa21.88■■□□□ 1.09
PRPF40A-204ENST00000450303 ZNF541Q9H0D2 1346 aa21.87■■□□□ 1.09
PRPF40A-204ENST00000450303 FSTL1Q12841 308 aa21.87■■□□□ 1.09
PRPF40A-204ENST00000450303 TWISTNBQ3B726 338 aaPredicted RBP21.87■■□□□ 1.09
PRPF40A-204ENST00000450303 DDX46Q7L014 1031 aaKnown RBP21.87■■□□□ 1.09
PRPF40A-204ENST00000450303 IL16Q14005 1332 aa21.86■■□□□ 1.09
PRPF40A-204ENST00000450303 SMC1BQ8NDV3 1235 aa21.86■■□□□ 1.09
PRPF40A-204ENST00000450303 ATP6V0A2Q9Y487 856 aa21.86■■□□□ 1.09
PRPF40A-204ENST00000450303 APLP1P51693 650 aa21.85■■□□□ 1.09
PRPF40A-204ENST00000450303 TRIM28Q13263 835 aaKnown RBP21.85■■□□□ 1.09
PRPF40A-204ENST00000450303 JARID2Q92833 1246 aaPredicted RBP21.85■■□□□ 1.09
PRPF40A-204ENST00000450303 CHMP4AQ9BY43 222 aa21.85■■□□□ 1.09
PRPF40A-204ENST00000450303 TMX4Q9H1E5 349 aaPredicted RBP21.85■■□□□ 1.09
PRPF40A-204ENST00000450303 IRS4O14654 1257 aaPredicted RBP21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 BBOX1O75936 387 aa21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 HTRA3P83110 453 aa21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 JDP2Q8WYK2 163 aa21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 STK31Q9BXU1 1019 aa21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 COL4A5P29400 1685 aa21.84■■□□□ 1.09
PRPF40A-204ENST00000450303 FANCIQ9NVI1 1328 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 FZD9O00144 591 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 DDX58O95786 925 aaKnown RBP21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 GRAPQ13588 217 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 GRIPAP1Q4V328 841 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 G2E3Q7L622 706 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 LARGE2Q8N3Y3 721 aa21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 GRAPLQ8TC17 118 aaPredicted RBP21.83■■□□□ 1.09
PRPF40A-204ENST00000450303 MAP3K2Q9Y2U5 619 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms