RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF316A6NFI3 1004 aaPredicted RBP27.03■■□□□ 1.92
SDC1-205ENST00000447124 HOXB7P09629 217 aa27.03■■□□□ 1.92
SDC1-205ENST00000447124 VEGFAP15692 232 aaPredicted RBP27.03■■□□□ 1.92
SDC1-205ENST00000447124 TCIRG1Q13488 830 aa27.03■■□□□ 1.92
SDC1-205ENST00000447124 UTP14AQ9BVJ6 771 aaKnown RBP27.03■■□□□ 1.92
SDC1-205ENST00000447124 ARFGEF2Q9Y6D5 1785 aa27.03■■□□□ 1.92
SDC1-205ENST00000447124 FKBP4Q02790 459 aaKnown RBP eCLIP27.02■■□□□ 1.923e-7■■■□□ 19.2
SDC1-205ENST00000447124 DPY19L2Q6NUT2 758 aa27.02■■□□□ 1.92
SDC1-205ENST00000447124 SLC51AQ86UW1 340 aa27.01■■□□□ 1.91
SDC1-205ENST00000447124 NLRP10Q86W26 655 aa27.01■■□□□ 1.91
SDC1-205ENST00000447124 RTKN2Q8IZC4 609 aa27.01■■□□□ 1.91
SDC1-205ENST00000447124 SYNE4Q8N205 404 aa27.01■■□□□ 1.91
SDC1-205ENST00000447124 ZNF277Q9NRM2 450 aaPredicted RBP27.01■■□□□ 1.91
SDC1-205ENST00000447124 IFT57Q9NWB7 429 aa27.01■■□□□ 1.91
SDC1-205ENST00000447124 RIC1Q4ADV7 1423 aa27■■□□□ 1.91
SDC1-205ENST00000447124 FSTL1Q12841 308 aa27■■□□□ 1.91
SDC1-205ENST00000447124 HSP90AB3PQ58FF7 597 aa27■■□□□ 1.91
SDC1-205ENST00000447124 DICER1Q9UPY3 1922 aaKnown RBP27■■□□□ 1.91
SDC1-205ENST00000447124 DDNO94850 711 aaPredicted RBP26.99■■□□□ 1.91
SDC1-205ENST00000447124 APLP1P51693 650 aa26.99■■□□□ 1.91
SDC1-205ENST00000447124 RPGRQ92834 1020 aaKnown RBP26.99■■□□□ 1.91
SDC1-205ENST00000447124 CRAMP1Q96RY5 1269 aa26.99■■□□□ 1.91
SDC1-205ENST00000447124 DBF4Q9UBU7 674 aaPredicted RBP26.99■■□□□ 1.91
SDC1-205ENST00000447124 GNAI1P63096 354 aa26.98■■□□□ 1.91
SDC1-205ENST00000447124 NLRP3Q96P20 1036 aa26.98■■□□□ 1.91
SDC1-205ENST00000447124 TIAM2Q8IVF5 1701 aa26.98■■□□□ 1.91
SDC1-205ENST00000447124 ELL2O00472 640 aaPredicted RBP26.97■■□□□ 1.91
SDC1-205ENST00000447124 ANKRD13DQ6ZTN6 518 aa26.97■■□□□ 1.91
SDC1-205ENST00000447124 PLBD2Q8NHP8 589 aa26.97■■□□□ 1.91
SDC1-205ENST00000447124 ZNF428Q96B54 188 aa26.97■■□□□ 1.91
SDC1-205ENST00000447124 RBM17Q96I25 401 aaKnown RBP26.97■■□□□ 1.91
SDC1-205ENST00000447124 SNED1Q8TER0 1413 aa26.97■■□□□ 1.91
SDC1-205ENST00000447124 DNAJC5GQ8N7S2 189 aa26.96■■□□□ 1.91
SDC1-205ENST00000447124 C8orf58Q8NAV2 365 aa26.96■■□□□ 1.91
SDC1-205ENST00000447124 HCLS1P14317 486 aaPredicted RBP26.95■■□□□ 1.9
SDC1-205ENST00000447124 CALD1Q05682 793 aaKnown RBP26.95■■□□□ 1.9
SDC1-205ENST00000447124 TCERG1O14776 1098 aaKnown RBP26.94■■□□□ 1.9
SDC1-205ENST00000447124 HTRA3P83110 453 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 CC2D2BQ6DHV5 1058 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 SMC1BQ8NDV3 1235 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 PSMD1Q99460 953 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 ISCA1Q9BUE6 129 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 HYPKQ9NX55 129 aa26.94■■□□□ 1.9
SDC1-205ENST00000447124 TRMT112Q9UI30 125 aaKnown RBP26.94■■□□□ 1.9
SDC1-205ENST00000447124 IARSP41252 1262 aaKnown RBP26.93■■□□□ 1.9
SDC1-205ENST00000447124 PHAXQ9H814 394 aaKnown RBP26.92■■□□□ 1.9
SDC1-205ENST00000447124 WDR90Q96KV7 1748 aa26.92■■□□□ 1.9
SDC1-205ENST00000447124 RNF123Q5XPI4 1314 aa26.91■■□□□ 1.9
SDC1-205ENST00000447124 ATP5J2-PTCD1G3V325 749 aa26.91■■□□□ 1.9
SDC1-205ENST00000447124 PPEF1O14829 653 aaPredicted RBP26.91■■□□□ 1.9
SDC1-205ENST00000447124 SH3TC1Q8TE82 1336 aa26.9■■□□□ 1.9
SDC1-205ENST00000447124 ZNF541Q9H0D2 1346 aa26.9■■□□□ 1.9
SDC1-205ENST00000447124 FZD9O00144 591 aa26.9■■□□□ 1.9
SDC1-205ENST00000447124 TSPYL6Q8N831 410 aa26.9■■□□□ 1.9
SDC1-205ENST00000447124 ANP32CO43423 234 aa26.89■■□□□ 1.9
SDC1-205ENST00000447124 MRS2Q9HD23 443 aa26.89■■□□□ 1.9
SDC1-205ENST00000447124 ABCC4O15439 1325 aa26.89■■□□□ 1.89
SDC1-205ENST00000447124 CCDC27Q2M243 656 aa26.88■■□□□ 1.89
SDC1-205ENST00000447124 WWC1Q8IX03 1113 aa26.88■■□□□ 1.89
SDC1-205ENST00000447124 L3MBTL3Q96JM7 780 aaPredicted RBP26.88■■□□□ 1.89
SDC1-205ENST00000447124 POTEIP0CG38 1075 aa26.87■■□□□ 1.89
SDC1-205ENST00000447124 POTEJP0CG39 1038 aa26.87■■□□□ 1.89
SDC1-205ENST00000447124 TRIM28Q13263 835 aaKnown RBP26.87■■□□□ 1.89
SDC1-205ENST00000447124 TSR2Q969E8 191 aaKnown RBP26.87■■□□□ 1.89
SDC1-205ENST00000447124 FAM89AQ96GI7 184 aa26.87■■□□□ 1.89
SDC1-205ENST00000447124 ATP6V0A2Q9Y487 856 aa26.87■■□□□ 1.89
SDC1-205ENST00000447124 GRIPAP1Q4V328 841 aa26.86■■□□□ 1.89
SDC1-205ENST00000447124 ANKRD36CQ5JPF3 1778 aa26.86■■□□□ 1.89
SDC1-205ENST00000447124 BBOX1O75936 387 aa26.85■■□□□ 1.89
SDC1-205ENST00000447124 RIC3Q7Z5B4 369 aa26.84■■□□□ 1.89
SDC1-205ENST00000447124 TAF1DQ9H5J8 278 aaPredicted RBP26.84■■□□□ 1.89
SDC1-205ENST00000447124 COL4A5P29400 1685 aa26.84■■□□□ 1.89
SDC1-205ENST00000447124 SP8Q8IXZ3 490 aa26.83■■□□□ 1.89
SDC1-205ENST00000447124 JDP2Q8WYK2 163 aa26.83■■□□□ 1.89
SDC1-205ENST00000447124 RTL5Q5HYW3 569 aaPredicted RBP26.82■■□□□ 1.88
SDC1-205ENST00000447124 DDX46Q7L014 1031 aaKnown RBP26.82■■□□□ 1.88
SDC1-205ENST00000447124 GOLGA2Q08379 1002 aa26.81■■□□□ 1.88
SDC1-205ENST00000447124 GRAPQ13588 217 aa26.81■■□□□ 1.88
SDC1-205ENST00000447124 SF3B3Q15393 1217 aaKnown RBP26.81■■□□□ 1.88
SDC1-205ENST00000447124 NCBP3Q53F19 620 aaKnown RBP26.81■■□□□ 1.88
SDC1-205ENST00000447124 CCDC30Q5VVM6 783 aa26.81■■□□□ 1.88
SDC1-205ENST00000447124 CHADLQ6NUI6 762 aa26.81■■□□□ 1.88
SDC1-205ENST00000447124 LARGE2Q8N3Y3 721 aa26.81■■□□□ 1.88
SDC1-205ENST00000447124 GRAPLQ8TC17 118 aaPredicted RBP26.81■■□□□ 1.88
SDC1-205ENST00000447124 IQCA1LA6NCM1 817 aa26.8■■□□□ 1.88
SDC1-205ENST00000447124 MYD88Q99836 296 aa26.8■■□□□ 1.88
SDC1-205ENST00000447124 LAMB2P55268 1798 aa26.79■■□□□ 1.88
SDC1-205ENST00000447124 GPC2Q8N158 579 aa26.79■■□□□ 1.88
SDC1-205ENST00000447124 RTFDC1Q9BY42 306 aaPredicted RBP26.79■■□□□ 1.88
SDC1-205ENST00000447124 SALL2Q9Y467 1007 aaPredicted RBP26.79■■□□□ 1.88
SDC1-205ENST00000447124 IRS4O14654 1257 aaPredicted RBP26.78■■□□□ 1.88
SDC1-205ENST00000447124 KLRG1Q96E93 195 aa26.78■■□□□ 1.88
SDC1-205ENST00000447124 TMX4Q9H1E5 349 aaPredicted RBP26.78■■□□□ 1.88
SDC1-205ENST00000447124 IL16Q14005 1332 aa26.77■■□□□ 1.88
SDC1-205ENST00000447124 EIF6P56537 245 aaKnown RBP26.77■■□□□ 1.88
SDC1-205ENST00000447124 AOC3Q16853 763 aa26.77■■□□□ 1.88
SDC1-205ENST00000447124 MPNDQ8N594 471 aa26.77■■□□□ 1.88
SDC1-205ENST00000447124 CELF1Q92879 486 aaKnown RBP26.77■■□□□ 1.88
SDC1-205ENST00000447124 HACL1Q9UJ83 578 aa26.77■■□□□ 1.88
SDC1-205ENST00000447124 TAF1P21675 1872 aa26.76■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms